timm issue

[jere1882]

I just followed the exact steps indicated in the ubuntu section of install.md

I cannot run training tough, because I get:

ModuleNotFoundError: No module named 'timm'

Simply running pip install timm messes up everything because it upgrades to torch 1.13.0. What do I do?

[jere1882]

I solved this one by installing timm 0.3.0 - Anyways, after this, there were loads of issues to deal with. The repo doesn't really work as published here, it requires a lot of grooming.
Go use a different segmentation ViT unless you really need to use this one.

[Areebol]

Fix problem

Recreate enviroment

I have the same problem, and i solved it as follows:

# file environment_open_mmlab.yaml is at the back
conda env create -f environment_open_mmlab.yaml
conda activate open-mmlab
cd SETR
pip install -e . --user
pip install numpy==1.23.5

Fix project's type error

And be careful, you need to change file mmseg/models/decode_heads/hlg_utils.py as follows.
from

# from 
 19 from mmseg.models.backbones.hlg_share import AttentionShareGlobal, AttentionShareLocal, DWMlp, InnerPatchEmbed

# to 
 19 from mmseg.models.backbones.hlg import AttentionShareGlobal, AttentionShareLocal, DWMlp, InnerPatchEmbed

Environment configuration file

The file environment_open_mmlab.yaml mentioned above is as follows.

name: open-mmlab
channels:
  - pytorch
  - defaults
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=4.5=1_gnu
  - blas=1.0=mkl
  - ca-certificates=2021.7.5=h06a4308_1
  - certifi=2021.5.30=py39h06a4308_0
  - cudatoolkit=10.1.243=h6bb024c_0
  - freetype=2.10.4=h5ab3b9f_0
  - intel-openmp=2021.3.0=h06a4308_3350
  - jpeg=9b=h024ee3a_2
  - lcms2=2.12=h3be6417_0
  - ld_impl_linux-64=2.35.1=h7274673_9
  - libffi=3.3=he6710b0_2
  - libgcc-ng=9.3.0=h5101ec6_17
  - libgomp=9.3.0=h5101ec6_17
  - libpng=1.6.37=hbc83047_0
  - libstdcxx-ng=9.3.0=hd4cf53a_17
  - libtiff=4.2.0=h85742a9_0
  - libwebp-base=1.2.0=h27cfd23_0
  - lz4-c=1.9.3=h295c915_1
  - mkl=2021.3.0=h06a4308_520
  - mkl-service=2.4.0=py39h7f8727e_0
  - mkl_fft=1.3.0=py39h42c9631_2
  - mkl_random=1.2.2=py39h51133e4_0
  - ncurses=6.2=he6710b0_1
  - ninja=1.10.2=hff7bd54_1
  - numpy=1.20.3=py39hf144106_0
  - numpy-base=1.20.3=py39h74d4b33_0
  - olefile=0.46=pyhd3eb1b0_0
  - openjpeg=2.4.0=h3ad879b_0
  - openssl=1.1.1l=h7f8727e_0
  - pillow=8.3.1=py39h2c7a002_0
  - pip=21.2.4=py39h06a4308_0
  - python=3.9.7=h12debd9_1
  - python_abi=3.9=2_cp39
  - pytorch=1.7.1=py3.9_cuda10.1.243_cudnn7.6.3_0
  - readline=8.1=h27cfd23_0
  - setuptools=58.0.4=py39h06a4308_0
  - six=1.16.0=pyhd3eb1b0_0
  - sqlite=3.36.0=hc218d9a_0
  - tk=8.6.11=h1ccaba5_0
  - torchaudio=0.7.2=py39
  - torchvision=0.8.2=py39_cu101
  - typing_extensions=3.10.0.2=pyh06a4308_0
  - tzdata=2021a=h5d7bf9c_0
  - wheel=0.37.0=pyhd3eb1b0_1
  - xz=5.2.5=h7b6447c_0
  - zlib=1.2.11=h7b6447c_3
  - zstd=1.4.9=haebb681_0
  - pip:
    - addict==2.4.0
    - attr==0.3.1
    - backcall==0.2.0
    - decorator==5.1.0
    - ipython==7.28.0
    - jedi==0.18.0
    - kornia==0.5.11
    - matplotlib-inline==0.1.3
    - mmcv-full==1.2.7
    - opencv-python==4.5.1.48
    - packaging==21.0
    - parso==0.8.2
    - pexpect==4.8.0
    - pickleshare==0.7.5
    - prompt-toolkit==3.0.20
    - ptyprocess==0.7.0
    - pygments==2.10.0
    - pyyaml==5.4.1
    - timm==0.3.2
    - traitlets==5.1.0
    - wcwidth==0.2.5
    - yapf==0.31.0

[SuperSpongecake]

conda env create -f environment_open_mmlab.yaml

Hello,I have install my environment follow you,but it still has some problem as follow:
Pip subprocess error:
ERROR: Command errored out with exit status 1:
command: /home/ices/miniconda3/envs/open-mmlab/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-mvmopo11/mmcv-full_a370c918fbd74b0d90c1b170c1022759/setup.py'"'"'; file='"'"'/tmp/pip-install-mvmopo11/mmcv-full_a370c918fbd74b0d90c1b170c1022759/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-vvhvsqg8
cwd: /tmp/pip-install-mvmopo11/mmcv-full_a370c918fbd74b0d90c1b170c1022759/
Complete output (13 lines):
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-install-mvmopo11/mmcv-full_a370c918fbd74b0d90c1b170c1022759/setup.py", line 302, in
ext_modules=get_extensions(),
File "/tmp/pip-install-mvmopo11/mmcv-full_a370c918fbd74b0d90c1b170c1022759/setup.py", line 223, in get_extensions
ext_ops = extension(
File "/home/ices/miniconda3/envs/open-mmlab/lib/python3.9/site-packages/torch/utils/cpp_extension.py", line 800, in CUDAExtension
library_dirs += library_paths(cuda=True)
File "/home/ices/miniconda3/envs/open-mmlab/lib/python3.9/site-packages/torch/utils/cpp_extension.py", line 892, in library_paths
if (not os.path.exists(_join_cuda_home(lib_dir)) and
File "/home/ices/miniconda3/envs/open-mmlab/lib/python3.9/site-packages/torch/utils/cpp_extension.py", line 1827, in _join_cuda_home
raise EnvironmentError('CUDA_HOME environment variable is not set. '
OSError: CUDA_HOME environment variable is not set. Please set it to your CUDA install root.
----------------------------------------
errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
ERROR: Could not find a version that satisfies the requirement mmcv-full==1.2.7 (from versions: 1.0rc0, 1.0rc2, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.2.4, 1.2.5, 1.2.6, 1.2.7, 1.3.0, 1.3.1, 1.3.3, 1.3.4, 1.3.5, 1.3.6, 1.3.7, 1.3.8, 1.3.9, 1.3.10, 1.3.11, 1.3.12, 1.3.13, 1.3.14, 1.3.15, 1.3.16, 1.3.17, 1.3.18, 1.4.0, 1.4.1, 1.4.2, 1.4.3, 1.4.4, 1.4.5, 1.4.6, 1.4.7, 1.4.8, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 1.6.0, 1.6.1, 1.6.2, 1.7.0, 1.7.1, 1.7.2)
ERROR: No matching distribution found for mmcv-full==1.2.7

[sanitizer84]

Fix problem

Recreate enviroment

I have the same problem, and i solved it as follows:

# file environment_open_mmlab.yaml is at the back
conda env create -f environment_open_mmlab.yaml
conda activate open-mmlab
cd SETR
pip install -e . --user
pip install numpy==1.23.5

Fix project's type error

And be careful, you need to change file mmseg/models/decode_heads/hlg_utils.py as follows. from

# from 
 19 from mmseg.models.backbones.hlg_share import AttentionShareGlobal, AttentionShareLocal, DWMlp, InnerPatchEmbed

# to 
 19 from mmseg.models.backbones.hlg import AttentionShareGlobal, AttentionShareLocal, DWMlp, InnerPatchEmbed

Environment configuration file

The file environment_open_mmlab.yaml mentioned above is as follows.

name: open-mmlab
channels:
  - pytorch
  - defaults
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=4.5=1_gnu
  - blas=1.0=mkl
  - ca-certificates=2021.7.5=h06a4308_1
  - certifi=2021.5.30=py39h06a4308_0
  - cudatoolkit=10.1.243=h6bb024c_0
  - freetype=2.10.4=h5ab3b9f_0
  - intel-openmp=2021.3.0=h06a4308_3350
  - jpeg=9b=h024ee3a_2
  - lcms2=2.12=h3be6417_0
  - ld_impl_linux-64=2.35.1=h7274673_9
  - libffi=3.3=he6710b0_2
  - libgcc-ng=9.3.0=h5101ec6_17
  - libgomp=9.3.0=h5101ec6_17
  - libpng=1.6.37=hbc83047_0
  - libstdcxx-ng=9.3.0=hd4cf53a_17
  - libtiff=4.2.0=h85742a9_0
  - libwebp-base=1.2.0=h27cfd23_0
  - lz4-c=1.9.3=h295c915_1
  - mkl=2021.3.0=h06a4308_520
  - mkl-service=2.4.0=py39h7f8727e_0
  - mkl_fft=1.3.0=py39h42c9631_2
  - mkl_random=1.2.2=py39h51133e4_0
  - ncurses=6.2=he6710b0_1
  - ninja=1.10.2=hff7bd54_1
  - numpy=1.20.3=py39hf144106_0
  - numpy-base=1.20.3=py39h74d4b33_0
  - olefile=0.46=pyhd3eb1b0_0
  - openjpeg=2.4.0=h3ad879b_0
  - openssl=1.1.1l=h7f8727e_0
  - pillow=8.3.1=py39h2c7a002_0
  - pip=21.2.4=py39h06a4308_0
  - python=3.9.7=h12debd9_1
  - python_abi=3.9=2_cp39
  - pytorch=1.7.1=py3.9_cuda10.1.243_cudnn7.6.3_0
  - readline=8.1=h27cfd23_0
  - setuptools=58.0.4=py39h06a4308_0
  - six=1.16.0=pyhd3eb1b0_0
  - sqlite=3.36.0=hc218d9a_0
  - tk=8.6.11=h1ccaba5_0
  - torchaudio=0.7.2=py39
  - torchvision=0.8.2=py39_cu101
  - typing_extensions=3.10.0.2=pyh06a4308_0
  - tzdata=2021a=h5d7bf9c_0
  - wheel=0.37.0=pyhd3eb1b0_1
  - xz=5.2.5=h7b6447c_0
  - zlib=1.2.11=h7b6447c_3
  - zstd=1.4.9=haebb681_0
  - pip:
    - addict==2.4.0
    - attr==0.3.1
    - backcall==0.2.0
    - decorator==5.1.0
    - ipython==7.28.0
    - jedi==0.18.0
    - kornia==0.5.11
    - matplotlib-inline==0.1.3
    - mmcv-full==1.2.7
    - opencv-python==4.5.1.48
    - packaging==21.0
    - parso==0.8.2
    - pexpect==4.8.0
    - pickleshare==0.7.5
    - prompt-toolkit==3.0.20
    - ptyprocess==0.7.0
    - pygments==2.10.0
    - pyyaml==5.4.1
    - timm==0.3.2
    - traitlets==5.1.0
    - wcwidth==0.2.5
    - yapf==0.31.0

Thanks a lot!
And I also comment the 16th line of mmseg/models/decode_heads/hlg_utils.py to surpress the error of 'ModuleNotFoundError: No module named 'mmseg.models.backbones.region_attention''

[SuperSpongecake]

Thank you very much for answering my question. Because of your answer, my problem has been perfectly solved. Thank you again

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