diff --git a/src/SURVIVOR.cpp b/src/SURVIVOR.cpp index a8d75f5..b5708fc 100644 --- a/src/SURVIVOR.cpp +++ b/src/SURVIVOR.cpp @@ -219,7 +219,7 @@ void official_interface(int argc, char *argv[]) { std::cerr << "\tmerge\tCompare or merge VCF files to generate a consensus or multi sample vcf files." << std::endl; std::cerr << "\tfilter\tFilter a vcf file based on size and/or regions to ignore" << std::endl; std::cerr << "\tstats\tReport multipe stats over a VCF file" << std::endl; - std::cerr << "\tcompareMUMMer\tAnnotates a VCF file with the breakpoints found with MUMMer (Show-diff)."<< std::endl; + std::cerr << "\tcompMUMMer\tAnnotates a VCF file with the breakpoints found with MUMMer (Show-diff)."<< std::endl; std::cerr << std::endl; diff --git a/src/analysis_sv/MUMmer_overlap.cpp b/src/analysis_sv/MUMmer_overlap.cpp index 64a6d11..9502a72 100644 --- a/src/analysis_sv/MUMmer_overlap.cpp +++ b/src/analysis_sv/MUMmer_overlap.cpp @@ -35,7 +35,7 @@ void comp_entries_mummer(std::vector & entries, std::string filenam if (found != std::string::npos) { id_denovo = filename.substr(found + 6); } else { - cout << "not found" << endl; + //cout << "not found" << endl; id_denovo = filename; }