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if run_differential set to False, CONTRAST_KEY variable is not created. This causes the following error:
NameError in line 133 of /SAN/vyplab/sbs_projects/pipelines/doubles/triples/PAPA/rules/differential_apa.smk:
name 'CONTRAST_NAME' is not defined
File "/SAN/vyplab/sbs_projects/pipelines/doubles/triples/PAPA/Snakefile", line 71, in <module>
File "/SAN/vyplab/sbs_projects/pipelines/doubles/triples/PAPA/rules/differential_apa.smk", line 133, in <module>
Solution is to no longer wrap the construction of the variable in the if loop, or alternatively the contrast name can be set to a dummy value (e.g. NULL). I think dummy value would be preferable as can allow users to not provide two conditions in sample table if wish to not run differential usage analysis.
The text was updated successfully, but these errors were encountered:
if run_differential set to False, CONTRAST_KEY variable is not created. This causes the following error:
Solution is to no longer wrap the construction of the variable in the if loop, or alternatively the contrast name can be set to a dummy value (e.g. NULL). I think dummy value would be preferable as can allow users to not provide two conditions in sample table if wish to not run differential usage analysis.
The text was updated successfully, but these errors were encountered: