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Create The Migration File #18

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mariamhammoud opened this issue Jul 16, 2021 · 0 comments

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mariamhammoud commented Jul 16, 2021

Get, manually, the list pathways IDs from Reactome.org
Loop through the list:
2.1. Download the pathway by its ID
2.2. Parse the pathway read to biopax format (readbiopax function, may return list of pathways)
2.3. Convert it to mully graph
2.4. Drugbank integration
2.5. Create a new database (if not exists) in the Neo4j server, having the same name as pathway's Reactome ID
2.6. Save the obtained mully graph in the Neo4j database

mariamhammoud self-assigned this

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