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all_feature_list.txt
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all_feature_list.txt
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4-mer -- AAAA
4-mer -- AAAC
4-mer -- AAAG
4-mer -- AAAT
4-mer -- AACA
4-mer -- AACC
4-mer -- AACG
4-mer -- AACT
4-mer -- AAGA
4-mer -- AAGC
4-mer -- AAGG
4-mer -- AAGT
4-mer -- AATA
4-mer -- AATC
4-mer -- AATG
4-mer -- AATT
4-mer -- ACAA
4-mer -- ACAC
4-mer -- ACAG
4-mer -- ACAT
4-mer -- ACCA
4-mer -- ACCC
4-mer -- ACCG
4-mer -- ACCT
4-mer -- ACGA
4-mer -- ACGC
4-mer -- ACGG
4-mer -- ACGT
4-mer -- ACTA
4-mer -- ACTC
4-mer -- ACTG
4-mer -- ACTT
4-mer -- AGAA
4-mer -- AGAC
4-mer -- AGAG
4-mer -- AGAT
4-mer -- AGCA
4-mer -- AGCC
4-mer -- AGCG
4-mer -- AGCT
4-mer -- AGGA
4-mer -- AGGC
4-mer -- AGGG
4-mer -- AGGT
4-mer -- AGTA
4-mer -- AGTC
4-mer -- AGTG
4-mer -- AGTT
4-mer -- ATAA
4-mer -- ATAC
4-mer -- ATAG
4-mer -- ATAT
4-mer -- ATCA
4-mer -- ATCC
4-mer -- ATCG
4-mer -- ATCT
4-mer -- ATGA
4-mer -- ATGC
4-mer -- ATGG
4-mer -- ATGT
4-mer -- ATTA
4-mer -- ATTC
4-mer -- ATTG
4-mer -- ATTT
4-mer -- CAAA
4-mer -- CAAC
4-mer -- CAAG
4-mer -- CAAT
4-mer -- CACA
4-mer -- CACC
4-mer -- CACG
4-mer -- CACT
4-mer -- CAGA
4-mer -- CAGC
4-mer -- CAGG
4-mer -- CAGT
4-mer -- CATA
4-mer -- CATC
4-mer -- CATG
4-mer -- CATT
4-mer -- CCAA
4-mer -- CCAC
4-mer -- CCAG
4-mer -- CCAT
4-mer -- CCCA
4-mer -- CCCC
4-mer -- CCCG
4-mer -- CCCT
4-mer -- CCGA
4-mer -- CCGC
4-mer -- CCGG
4-mer -- CCGT
4-mer -- CCTA
4-mer -- CCTC
4-mer -- CCTG
4-mer -- CCTT
4-mer -- CGAA
4-mer -- CGAC
4-mer -- CGAG
4-mer -- CGAT
4-mer -- CGCA
4-mer -- CGCC
4-mer -- CGCG
4-mer -- CGCT
4-mer -- CGGA
4-mer -- CGGC
4-mer -- CGGG
4-mer -- CGGT
4-mer -- CGTA
4-mer -- CGTC
4-mer -- CGTG
4-mer -- CGTT
4-mer -- CTAA
4-mer -- CTAC
4-mer -- CTAG
4-mer -- CTAT
4-mer -- CTCA
4-mer -- CTCC
4-mer -- CTCG
4-mer -- CTCT
4-mer -- CTGA
4-mer -- CTGC
4-mer -- CTGG
4-mer -- CTGT
4-mer -- CTTA
4-mer -- CTTC
4-mer -- CTTG
4-mer -- CTTT
4-mer -- GAAA
4-mer -- GAAC
4-mer -- GAAG
4-mer -- GAAT
4-mer -- GACA
4-mer -- GACC
4-mer -- GACG
4-mer -- GACT
4-mer -- GAGA
4-mer -- GAGC
4-mer -- GAGG
4-mer -- GAGT
4-mer -- GATA
4-mer -- GATC
4-mer -- GATG
4-mer -- GATT
4-mer -- GCAA
4-mer -- GCAC
4-mer -- GCAG
4-mer -- GCAT
4-mer -- GCCA
4-mer -- GCCC
4-mer -- GCCG
4-mer -- GCCT
4-mer -- GCGA
4-mer -- GCGC
4-mer -- GCGG
4-mer -- GCGT
4-mer -- GCTA
4-mer -- GCTC
4-mer -- GCTG
4-mer -- GCTT
4-mer -- GGAA
4-mer -- GGAC
4-mer -- GGAG
4-mer -- GGAT
4-mer -- GGCA
4-mer -- GGCC
4-mer -- GGCG
4-mer -- GGCT
4-mer -- GGGA
4-mer -- GGGC
4-mer -- GGGG
4-mer -- GGGT
4-mer -- GGTA
4-mer -- GGTC
4-mer -- GGTG
4-mer -- GGTT
4-mer -- GTAA
4-mer -- GTAC
4-mer -- GTAG
4-mer -- GTAT
4-mer -- GTCA
4-mer -- GTCC
4-mer -- GTCG
4-mer -- GTCT
4-mer -- GTGA
4-mer -- GTGC
4-mer -- GTGG
4-mer -- GTGT
4-mer -- GTTA
4-mer -- GTTC
4-mer -- GTTG
4-mer -- GTTT
4-mer -- TAAA
4-mer -- TAAC
4-mer -- TAAG
4-mer -- TAAT
4-mer -- TACA
4-mer -- TACC
4-mer -- TACG
4-mer -- TACT
4-mer -- TAGA
4-mer -- TAGC
4-mer -- TAGG
4-mer -- TAGT
4-mer -- TATA
4-mer -- TATC
4-mer -- TATG
4-mer -- TATT
4-mer -- TCAA
4-mer -- TCAC
4-mer -- TCAG
4-mer -- TCAT
4-mer -- TCCA
4-mer -- TCCC
4-mer -- TCCG
4-mer -- TCCT
4-mer -- TCGA
4-mer -- TCGC
4-mer -- TCGG
4-mer -- TCGT
4-mer -- TCTA
4-mer -- TCTC
4-mer -- TCTG
4-mer -- TCTT
4-mer -- TGAA
4-mer -- TGAC
4-mer -- TGAG
4-mer -- TGAT
4-mer -- TGCA
4-mer -- TGCC
4-mer -- TGCG
4-mer -- TGCT
4-mer -- TGGA
4-mer -- TGGC
4-mer -- TGGG
4-mer -- TGGT
4-mer -- TGTA
4-mer -- TGTC
4-mer -- TGTG
4-mer -- TGTT
4-mer -- TTAA
4-mer -- TTAC
4-mer -- TTAG
4-mer -- TTAT
4-mer -- TTCA
4-mer -- TTCC
4-mer -- TTCG
4-mer -- TTCT
4-mer -- TTGA
4-mer -- TTGC
4-mer -- TTGG
4-mer -- TTGT
4-mer -- TTTA
4-mer -- TTTC
4-mer -- TTTG
4-mer -- TTTT
PCP descriptor 1
PCP descriptor 2
PCP descriptor 3
composition descriptor 1 -- A
composition descriptor 2 -- C
composition descriptor 3 -- G
composition descriptor 4 -- T
entropy-density-profile (EDP) descriptor 1 -- D_EH'
entropy-density-profile (EDP) descriptor 2 -- D_EQ'
entropy-density-profile (EDP) descriptor 3 -- D_(E_A')
entropy-density-profile (EDP) descriptor 4 -- D_(E_C')
entropy-density-profile (EDP) descriptor 5 -- D_(E_G)
entropy-density-profile (EDP) descriptor 6 -- D_(E_T)
transition descriptor 1 -- DT(A, C)
transition descriptor 2 -- DT(A, G)
transition descriptor 3 -- DT(A, T)
transition descriptor 4 -- DT(C, G)
transition descriptor 5 -- DT(C, T)
transition descriptor 6 -- DT(G, T)
transition descriptor 7 -- DT(A, A)
transition descriptor 8 -- DT(C, C)
transition descriptor 9 -- DT(G, G)
transition descriptor 10 -- DT(T, T)
distribution descriptor 1 -- 1st position of A
distribution descriptor 2 -- position at Q1 A
distribution descriptor 3 -- position at Q2 A
distribution descriptor 4 -- position at Q3 A
distribution descriptor 5 -- last position of A
distribution descriptor 6 -- 1st position of C
distribution descriptor 7 -- position at Q1 C
distribution descriptor 8 -- position at Q2 C
distribution descriptor 9 -- position at Q3 C
distribution descriptor 10 -- last position of C
distribution descriptor 11 -- 1st position of G
distribution descriptor 12 -- position at Q1 G
distribution descriptor 13 -- position at Q2 G
distribution descriptor 14 -- position at Q3 G
distribution descriptor 15 -- last position of G
distribution descriptor 16 -- 1st position of T
distribution descriptor 17 -- position at Q1 T
distribution descriptor 18 -- position at Q2 T
distribution descriptor 19 -- position at Q3 T
distribution descriptor 20 -- last position of T
Center position of TF-bs, relative to Transcription Start Site (upstream or downstream)
Center position of TF-bs, relative to Transcription Start Site (distance)
Prevents RNA polymerase binding (overlap -35~-10, overlap:1, non:0)
The number of overlapping
The distance between CRP and RNA polymerase (where is upstream or downstream)
Upstream of Transcription Start Site or not.(UP:1, down:0)
Block transcription bubble or not (After RNA polymerase binding, a transcription bubble is created between positions -10 and 2)
Block transcription bubble (The number of overlapping)
Prevents other TF binding: Repressor
Prevents other TF binding: Activator
Forward or Reverse
Class I activation at position -95~-60 or not
How many Class I activation
Class II activation at position -50~-35 or not
How many Class II activation
Activation by repressor modulation at position -60~60 or not
How many Activation by repressor
Repression by roadblock at position -10~60 or not
How many Repression by roadback
Repression by DNA looping at position -60~60 or not
How many DNA looping
Repression by activator modulation at position -95~-10 or not
How many Repression by activation
Cooperative activation at position -95~-35 or not
How many cooperative activation
Cooperative repression at position -60~60 or not
How many Cooperative repression
Promoter escape regulation at position -10~10 or not
How many Promoter escape
AAA
AAC
AAG
AAT
ACA
ACC
ACG
ACT
AGA
AGC
AGG
AGT
ATA
ATC
ATG
ATT
CAA
CAC
CAG
CAT
CCA
CCC
CCG
CCT
CGA
CGC
CGG
CGT
CTA
CTC
CTG
CTT
GAA
GAC
GAG
GAT
GCA
GCC
GCG
GCT
GGA
GGC
GGG
GGT
GTA
GTC
GTG
GTT
TAA
TAC
TAG
TAT
TCA
TCC
TCG
TCT
TGA
TGC
TGG
TGT
TTA
TTC
TTG
TTT