From 9b3f01e369d84bf8fe0cd131321f111367ed1dc4 Mon Sep 17 00:00:00 2001
From: Federico Marotta <federicomarotta@mail.com>
Date: Mon, 14 Oct 2019 17:33:50 +0200
Subject: [PATCH] X-mkprj: add editorconfig template

---
 bioinfoconda/prj/X-mkprj.sh         |  7 +++++++
 bioinfoconda/templates/editorconfig | 21 +++++++++++++++++++++
 2 files changed, 28 insertions(+)
 create mode 100644 bioinfoconda/templates/editorconfig

diff --git a/bioinfoconda/prj/X-mkprj.sh b/bioinfoconda/prj/X-mkprj.sh
index c70f637..91091e9 100755
--- a/bioinfoconda/prj/X-mkprj.sh
+++ b/bioinfoconda/prj/X-mkprj.sh
@@ -154,16 +154,23 @@ function create_templates()
     prjpath=$1
     prjname=$(basename $prjpath)
 
+	# Snakemake templates
     cp $templatespath/Snakefile $prjpath/local/snakefiles/main.smk
     cp $templatespath/latex.smk $prjpath/local/snakefiles/
     sed_template $templatespath/snakemake_config.yml > $prjpath/local/config/snakemake_config.yml
 
+	# Docker templates
     sed_template $templatespath/Dockerfile > $prjpath/local/dockerfiles/Dockerfile
     sed_template $templatespath/docker-entrypoint.sh > $prjpath/local/dockerfiles/docker-entrypoint.sh
     cp $templatespath/dockerignore $prjpath/local/dockerfiles/dockerignore
 
+	# Rmarkdown templates
     sed_template $templatespath/notebook.Rmd > $prjpath/local/doc/report/notebook.Rmd
 
+	# Editorconfig
+	cp $templatespath/editorconfig $prjpath/.editorconfig
+
+	# Symbolic links
     ln -s ../local/snakefiles/main.smk $prjpath/dataset/Snakefile
     ln -s local/dockerfiles/dockerignore $prjpath/.dockerignore
 
diff --git a/bioinfoconda/templates/editorconfig b/bioinfoconda/templates/editorconfig
new file mode 100644
index 0000000..cdba3a7
--- /dev/null
+++ b/bioinfoconda/templates/editorconfig
@@ -0,0 +1,21 @@
+# top-most EditorConfig file
+root = true
+
+# Unix-style newlines with a newline ending every file
+[*]
+end_of_line = lf
+insert_final_newline = true
+
+# Trim trailing whitespace when saving
+[*]
+trim_trailing_whitespace = true
+
+# 4 space indentation
+[*]
+indent_style = space
+indent_size = 4
+
+# # Indentation override for all files under lib directory
+# [lib/**]
+# indent_style = unset
+# indent_size = unset