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@melina-leite given the large number of people that have problems with this, I would see this as priority for the 0.4.8 release!
My ideal solution would be to copy the syntax (possibly also the code) from the lme4 plot.merMod command, where one can say
form = res ~ variable | group
where
res allows to specify different residual definitions
variable is the variable on x
group allows to create several plots per group
Cases 1 and 3 could also be done later. About 3: lme4 uses the lattice framework for the group plots - I'm not sure if I like this visually, because it breaks with our other graphics, but I guess that a solution via par(mfrow = c()) for creating several panels will be much more fragile (in particular regarding this error if the plot window is not large enough).
plotResiduals() should get an update. There are two main issues:
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