What is the best way to estimate event rate in 1p using CaImAn?

[programerkotik]

I'd like to obtain a reliable estimate of the event rate (number of calcium peaks per unit time). What would be the best way to do this using CaImAn? I have already fitted the model and computed dF/F.

Thank you!
Anna

[pgunn]

Hello,
Probably the best way to do this is to save the traces in C (there's some code in demo_pipeline showing how to do that) to a pandas dataframe or a file and after that, it should be pretty easy to iterate over the bodies you care about (or all of them) and calculate a rate.