linux run result file not readable in windows gui

[lsookie]

I don't know why it runs extra slow on windows (i9, 32g; RTX1060), not sure if it's the configuration.
Then I tried to run it on another computer and it was slightly faster (linux, 3090), but the results of the run I got an error when I viewed it on windows using the gui.

E:\fangjie\calcuim_image\calman\caiman_gui.py:32: DeprecationWarning: magic(...) is deprecated since IPython 0.13 (warning added in 8.1), use run_line_magic(magic_name, parameter_s).
get_ipython().magic('load_ext autoreload')
E:\fangjie\calcuim_image\calman\caiman_gui.py:33: DeprecationWarning: magic(...) is deprecated since IPython 0.13 (warning added in 8.1), use run_line_magic(magic_name, parameter_s).
get_ipython().magic('autoreload 2')
Traceback (most recent call last):
File "D:\anaconda\envs\ca1\envs\caiman\lib\site-packages\IPython\core\interactiveshell.py", line 3550, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File "", line 1, in
runfile('E:\fangjie\calcuim_image\calman\caiman_gui.py', wdir='E:\fangjie\calcuim_image\calman')
File "D:\PyCharm 2024.1.2\plugins\python\helpers\pydev_pydev_bundle\pydev_umd.py", line 197, in runfile
pydev_imports.execfile(filename, global_vars, local_vars) # execute the script
File "D:\PyCharm 2024.1.2\plugins\python\helpers\pydev_pydev_imps_pydev_execfile.py", line 18, in execfile
exec(compile(contents+"\n", file, 'exec'), glob, loc)
File "E:\fangjie\calcuim_image\calman\caiman_gui.py", line 73, in
mov = caiman.load(cnm_obj.mmap_file)
File "D:\anaconda\envs\ca1\envs\caiman\lib\site-packages\caiman\base\movies.py", line 1701, in load
Yr, dims, T = load_memmap(
File "D:\anaconda\envs\ca1\envs\caiman\lib\site-packages\caiman\mmapping.py", line 59, in load_memmap
d1, d2, d3, T, order = int(fpart[-9]), int(fpart[-7]), int(fpart[-5]), int(fpart[-1]), fpart[-3]
ValueError: invalid literal for int() with base 10: 'd1'

[pgunn]

I'm reminded how ugly (and fragile-looking) that filename-parsing logic is; eventually we'll want to get away from encoding parameters like that in the filename and store them in json or something like that.

I haven't used the caiman_gui.py program for a long time (generally the jupyter notebooks are a better choice for visualisation). I'm guessing the file/path changes a few releases back broke this because I forgot to make corresponding changes to the gui. I'll look at this early next week; I suspect the fix won't be too hard. Sorry for the fuss.

[pgunn]

Hi,
I have time to look at this now, but I'm realising I don't know exactly the process you were using to get this - what notebook/script were you running before you continued with the caiman_gui program?

[pgunn]

Also, what are the filenames of the hdf5 and mmap files you're trying to load? And what versions of caiman are you using on both the Windows and Linux side?

[lsookie]

      I apologize for not getting back to you until now.       The code I'm running is demo_pipeline.I'm using caiman_GUI in a linux environment to load mmap and hdf5 files so that no errors are reported, but I can't make changes to the roi. When I manipulate the same files in windows, caiman_GUI reports an error. [cid:ed763c6f-9784-4efa-9557-e028703d9d5d]

…

________________________________ 发件人: Pat Gunn ***@***.***> 发送时间: 2024年6月11日 3:37 收件人: flatironinstitute/CaImAn ***@***.***> 抄送: Shuqi Lu ***@***.***>; Author ***@***.***> 主题: Re: [flatironinstitute/CaImAn] linux run result file not readable in windows gui (Issue #1360) Also, what are the filenames of the hdf5 and mmap files you're trying to load? — Reply to this email directly, view it on GitHub<#1360 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/A3O5IDO6EZDGZHTKVWSZDUTZGX6ABAVCNFSM6AAAAABI7ZOMZOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCNJZGE2DONZTGM>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[pgunn]

Sorry for the delay in getting back to you; was out of the country for a scientific conference.

What are the filenames you were trying to load, and what versions of caiman are present on your linux side and the windows side?