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Trim high identity sites/columns from alignment? #83

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metasoarous opened this issue Mar 31, 2020 · 0 comments
Open

Trim high identity sites/columns from alignment? #83

metasoarous opened this issue Mar 31, 2020 · 0 comments

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@metasoarous
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From: https://twitter.com/firefoxx66/status/1244956562550120448?s=20

Is there a good python module/code that can (speedily) read in - or reduce to after reading in - only the variable sites from a sequence alignment?

Maybe something like a --trim-invariant and/or --trim-invariant-threshold options?
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