From 019b0b55bfad3e62e56b3034a48b19ee1975c4e2 Mon Sep 17 00:00:00 2001
From: wolski <wewolski@gmail.com>
Date: Tue, 3 Sep 2024 22:33:32 +0200
Subject: [PATCH] temp

---
 R/utilities.R         | 6 +++++-
 man/LFQDataPlotter.Rd | 2 +-
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/R/utilities.R b/R/utilities.R
index 9dd74eb0..502615fb 100644
--- a/R/utilities.R
+++ b/R/utilities.R
@@ -460,7 +460,11 @@ panel_cor <- function(x, y, digits = 2, ...)
 #' pairs_smooth(tmp,log="xy",main="small data", legend=TRUE)
 #' @seealso also \code{\link{pairs}}
 pairs_smooth <- function(data, legend = FALSE, ...) {
-
+  non_na_counts <- apply(data, 2, function(x) sum(!is.na(x)))
+  min_col <- which(non_na_counts < 2)
+  if(length(min_col) >= 1){
+    data <- data[, -min_col, drop = FALSE]
+  }
   pairs(
     data,
     upper.panel = function(x, y) {
diff --git a/man/LFQDataPlotter.Rd b/man/LFQDataPlotter.Rd
index 00fe9bdf..e3d890a6 100644
--- a/man/LFQDataPlotter.Rd
+++ b/man/LFQDataPlotter.Rd
@@ -19,13 +19,13 @@ lfqdata <- LFQData$new(
  istar$data,
  istar$config)
 #LFQDataPlotter$debug("boxplots")
+LFQDataPlotter$debug("pairs_smooth")
 lfqplotter <- lfqdata$get_Plotter()
 
 stopifnot(class(lfqplotter$heatmap()) == "pheatmap")
 stopifnot(class(lfqplotter$heatmap_cor()) == "pheatmap")
 stopifnot("ggplot" \%in\% class(lfqplotter$pca()))
 stopifnot("plotly" \%in\%  class(lfqplotter$pca_plotly()))
-
 tmp <- lfqplotter$boxplots()
 stopifnot("ggplot" \%in\%  class(tmp$boxplot[[1]]))
 stopifnot("ggplot" \%in\% class(lfqplotter$missigness_histogram()))