From 02f308ddd206d709425d715ac7eb6ed14ae4e23a Mon Sep 17 00:00:00 2001 From: fcaretti Date: Fri, 14 Jun 2024 11:23:24 +0200 Subject: [PATCH] Try --- .github/workflows/main.yml | 8 ++++---- workflow/Snakefile | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 02bc478..f840e26 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -51,12 +51,12 @@ jobs: - name: Test workflow uses: snakemake/snakemake-github-action@v1.24.0 with: - directory: .test - snakefile: workflow/Snakefile + directory: '.test' + snakefile: 'workflow/Snakefile' args: "--dry-run --use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp" - name: Test report uses: snakemake/snakemake-github-action@v1.24.0 with: - directory: . - snakefile: workflow/Snakefile + directory: '.' + snakefile: 'workflow/Snakefile' args: "--report report.zip" \ No newline at end of file diff --git a/workflow/Snakefile b/workflow/Snakefile index b2ce455..9bcfb63 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -2,7 +2,7 @@ import glob import os -configfile: "config/config.yml" +configfile: ".test/config/config.yml" # Access the data folder from the config