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Install error #57

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MaestSi opened this issue Jul 2, 2019 · 0 comments
Open

Install error #57

MaestSi opened this issue Jul 2, 2019 · 0 comments

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@MaestSi
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MaestSi commented Jul 2, 2019

Dear Pavian developers,
I am facing some issues while trying to install the tool.
Inside R v3.5.1 I am running:
remotes::install_github("fbreitwieser/pavian", force=TRUE)
These are the error messages I get:

Downloading GitHub repo fbreitwieser/pavian@master
Running R CMD build...

  • checking for file ‘/tmp/RtmpwvnLb2/remotes62d91555a36a/fbreitwieser-pavian-eb5bfb3/DESCRIPTION’ ... OK
  • preparing ‘pavian’:
  • checking DESCRIPTION meta-information ... OK
  • checking for LF line-endings in source and make files and shell scripts
  • checking for empty or unneeded directories
  • building ‘pavian_0.8.4.tar.gz’
  • installing source package ‘pavian’ ...
    ** R
    ** inst
    ** byte-compile and prepare package for lazy loading
    Error in rbind(info, getNamespaceInfo(env, "S3methods")) :
    il numero di colonne delle matrici deve coincidere (si veda arg 2)
    ERROR: lazy loading failed for package ‘pavian’
  • removing ‘/home/simone/miniconda3/envs/Centrifuge_env/lib/R/library/pavian’
  • restoring previous ‘/home/simone/miniconda3/envs/Centrifuge_env/lib/R/library/pavian’
    Errore: Failed to install 'pavian' from GitHub:
    (contertito da avviso) installation of package ‘/tmp/RtmpwvnLb2/file62d96101112f/pavian_0.8.4.tar.gz’ had non-zero exit status

Do you know how could I fix this?
I installed R and all other dependencies with miniconda. Is there a Pavian conda installation?
Thanks,
Simone

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