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Loading KrakenUniq report-file fails #55

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ZhouHui0916 opened this issue Jun 4, 2019 · 1 comment
Open

Loading KrakenUniq report-file fails #55

ZhouHui0916 opened this issue Jun 4, 2019 · 1 comment

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@ZhouHui0916
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Hi fbreitwieser ,The web site https://fbreitwieser.shinyapps.io/pavian/ can not support krakenuniq --report-file .Or i missed something. The formats are as follows.

% reads taxReads kmers dup cov taxID rank taxName
76.28 5141281 5141281 3266800457 1.1 1.12e+05 0 no rank unclassified
23.72 1598943 241 2295577120 1.06 0.105 1 no rank root
23.71 1597928 564 2295577120 1.06 0.1061 131567 no rank cellular organisms
15.73 1060337 0 2258287516 1.05 0.9016 2759 superkingdom Eukaryota
15.73 1060337 0 2258287516 1.05 0.9016 33154 no rank Opisthokonta
15.73 1060337 0 2258287516 1.05 0.9016 33208 kingdom Metazoa

@ZhouHui0916 ZhouHui0916 changed the title Loading KrakenUniq fails Loading KrakenUniq report-file fails Jun 4, 2019
@fanninpm
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@fbreitwieser The shinyapps instance is currently running pavian_0.8.4. Is it feasible to upgrade that instance to the latest version?

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