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hctsa-python-matlab-tests.py
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import unittest
import statistics as stats
from scipy import stats
import warnings
import h5py
import math
import scipy.io
import time
import numpy as np
import pandas as pd
import statsmodels.sandbox.stats.runs as runs
from Operations import *
from Periphery import *
def get_column_names(vname,f):
names = []
for name in vname[0]:
obj = f[name]
col_name = ''.join(chr(i) for i in obj[:])
names.append(col_name)
return names
def read_in_NICU_file(path):
arrays = {}
f = h5py.File(path,'r')
for k, v in f.items():
if k != 'vdata' and k != 'vt':
continue
arrays[k] = np.array(v)
df = pd.DataFrame(np.transpose(arrays['vdata']))
df = df.dropna(axis=1, how='all')
df.columns = get_column_names(f['vname'],f)
times = pd.Series(arrays['vt'][0], index=df.index)
return df,times
def roundDict(d,digits = 3):
if isinstance(d,dict):
for key in d:
d[key] = round(d[key],digits)
return d
else:
return round(d,digits)
def closeEnough(d1,d2,dist = .05):
if isinstance(d1,dict):
for key in d1:
if key not in d2.keys():
print(key)
return False
if np.absolute(d1[key] - d2[key]) > dist:
print(key)
print(np.absolute(d1[key] - d2[key]))
return False
return True
else:
if np.absolute(d1 - d2) > dist:
return False
return True
x = np.random.rand(500)
y = np.random.rand(1000)
df = read_in_NICU_file('test.mat')
hr = df[0]['HR'].to_numpy()
hr = hr[:500]
import matlab.engine
eng = matlab.engine.start_matlab()
matlab_path = '/path/to/hctsa/'
eng.addpath(matlab_path + 'Operations/')
eng.addpath(matlab_path + 'Toolboxes/Physionet/')
eng.addpath(matlab_path + 'Toolboxes/Rudy_Moddemeijer/')
eng.addpath(matlab_path + 'PeripheryFunctions/')
eng.addpath(matlab_path + 'Toolboxes/ZG_hmm')
class test_DN_functions(unittest.TestCase):
def test_DN_Mean(self):
pyDrift1 = roundDict(DN_Mean(x),2)
pyDrift2 = roundDict(DN_Mean(y),2)
pyDrift3 = roundDict(DN_Mean(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_Mean(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_Mean(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_Mean(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_DN_pleft(self):
pyDrift1 = roundDict(DN_pleft(x),2)
pyDrift2 = roundDict(DN_pleft(y),2)
pyDrift3 = roundDict(DN_pleft(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_pleft(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_pleft(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_pleft(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i])
self.assertTrue(result)
#The fitting in python vs matlab different causes non matches
def test_DN_CompareKSFit(self):
pyDrift1 = roundDict(DN_CompareKSFit(x),2)
pyDrift2 = roundDict(DN_CompareKSFit(y),2)
pyDrift3 = roundDict(DN_CompareKSFit(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_CompareKSFit(x,"norm")'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_CompareKSFit(x,"norm")'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_CompareKSFit(x,"norm")'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i])
self.assertTrue(result)
def test_DN_cv(self):
pyDrift1 = roundDict(DN_cv(x),2)
pyDrift2 = roundDict(DN_cv(y),2)
pyDrift3 = roundDict(DN_cv(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_cv(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_cv(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_cv(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i])
self.assertTrue(result)
def test_DN_RemovePoints(self):
pyDrift1 = roundDict(DN_RemovePoints(x),2)
pyDrift2 = roundDict(DN_RemovePoints(y),2)
pyDrift3 = roundDict(DN_RemovePoints(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_RemovePoints(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_RemovePoints(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_RemovePoints(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
result = True
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i],.01)
self.assertTrue(result)
def test_DN_TrimmedMean50(self):
pyDrift1 = roundDict(DN_TrimmedMean(x,.50),2)
pyDrift2 = roundDict(DN_TrimmedMean(y,.50),2)
pyDrift3 = roundDict(DN_TrimmedMean(hr,.50),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_TrimmedMean(x,50)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_TrimmedMean(x,50)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_TrimmedMean(x,50)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_DN_TrimmedMean75(self):
pyDrift1 = roundDict(DN_TrimmedMean(x,.75),2)
pyDrift2 = roundDict(DN_TrimmedMean(y,.75),2)
pyDrift3 = roundDict(DN_TrimmedMean(hr,.75),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_TrimmedMean(x,75)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_TrimmedMean(x,75)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_TrimmedMean(x,75)'),2)
pythonResults = [pyDrift1,pyDrift2]
matlabResults = [matDrift1,matDrift2]
self.assertEqual(pythonResults,matlabResults)
def test_DN_TrimmedMean25(self):
pyDrift1 = roundDict(DN_TrimmedMean(x,.25),2)
pyDrift2 = roundDict(DN_TrimmedMean(y,.25),2)
pyDrift3 = roundDict(DN_TrimmedMean(hr,.25),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_TrimmedMean(x,25)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_TrimmedMean(x,25)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_TrimmedMean(x,25)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_DN_OutlierTest25(self):
pyDrift1 = roundDict(DN_OutlierTest(x,25),2)
pyDrift2 = roundDict(DN_OutlierTest(y,25),2)
pyDrift3 = roundDict(DN_OutlierTest(hr,25),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_OutlierTest(x,25)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_OutlierTest(x,25)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_OutlierTest(x,25)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_DN_OutlierTest(self):
pyDrift1 = roundDict(DN_OutlierTest(x,1),3)
pyDrift2 = roundDict(DN_OutlierTest(y,1),3)
pyDrift3 = roundDict(DN_OutlierTest(hr,1),3)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_OutlierTest(x,1)'),3)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_OutlierTest(x,1)'),3)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_OutlierTest(x,1)'),3)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_DN_OutlierTest10(self):
pyDrift1 = roundDict(DN_OutlierTest(x,10),2)
pyDrift2 = roundDict(DN_OutlierTest(y,10),2)
pyDrift3 = roundDict(DN_OutlierTest(hr,10),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('DN_OutlierTest(x,10)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('DN_OutlierTest(x,10)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('DN_OutlierTest(x,10)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
class test_CO_functions(unittest.TestCase):
def test_CO_f1ecac(self):
pyDrift1 = roundDict(CO_f1ecac(x),2) + 1.0
pyDrift2 = roundDict(CO_f1ecac(y),2) + 1.0
pyDrift3 = roundDict(CO_f1ecac(hr),2) + 1.0
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_f1ecac(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_f1ecac(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_f1ecac(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_FirstMin(self):
pyDrift1 = roundDict(CO_FirstMin(x),2)
pyDrift2 = roundDict(CO_FirstMin(y),2)
pyDrift3 = roundDict(CO_FirstMin(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_FirstMin(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_FirstMin(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_FirstMin(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_glscf22(self):
pyDrift1 = roundDict(CO_glscf(x,2,2),2)
pyDrift2 = roundDict(CO_glscf(y,2,2),2)
pyDrift3 = roundDict(CO_glscf(hr,2,2),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_glscf(x,2,2)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_glscf(x,2,2)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_glscf(x,2,2)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_glscf14(self):
pyDrift1 = roundDict(CO_glscf(x,1,4),2)
pyDrift2 = roundDict(CO_glscf(y,1,4),2)
pyDrift3 = roundDict(CO_glscf(hr,1,4),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_glscf(x,1,4)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_glscf(x,1,4)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_glscf(x,1,4)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_trev(self):
pyDrift1 = roundDict(CO_trev(x),2)
pyDrift2 = roundDict(CO_trev(y),2)
pyDrift3 = roundDict(CO_trev(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_trev(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_trev(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_trev(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_tc3(self):
pyDrift1 = roundDict(CO_tc3(x),2)
pyDrift2 = roundDict(CO_tc3(y),2)
pyDrift3 = roundDict(CO_tc3(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_tc3(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_tc3(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_tc3(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_FirstZero(self):
pyDrift1 = roundDict(CO_FirstZero(x),2)
pyDrift2 = roundDict(CO_FirstZero(y),2)
pyDrift3 = roundDict(CO_FirstZero(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_FirstZero(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_FirstZero(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_FirstZero(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_fzcglscf(self):
pyDrift1 = roundDict(CO_fzcglscf(x,2,2),2)
pyDrift2 = roundDict(CO_fzcglscf(y,2,2),2)
pyDrift3 = roundDict(CO_fzcglscf(hr,2,2),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_fzcglscf(x,2,2)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_fzcglscf(x,2,2)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_fzcglscf(x,2,2)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_fzcglscf15(self):
pyDrift1 = roundDict(CO_fzcglscf(x,1,5),2)
pyDrift2 = roundDict(CO_fzcglscf(y,1,5),2)
pyDrift3 = roundDict(CO_fzcglscf(hr,1,5),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_fzcglscf(x,1,5)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_fzcglscf(x,1,5)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_fzcglscf(x,1,5)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_NonlinearAutocorr(self):
pyDrift1 = roundDict(CO_NonlinearAutocorr(x,[1,2,3,4,5]),1)
pyDrift2 = roundDict(CO_NonlinearAutocorr(y,[1,2,3,4,5]),1)
pyDrift3 = roundDict(CO_NonlinearAutocorr(hr,[1,2,3,4,5]),1)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_NonlinearAutocorr(x,[1,2,3,4,5])'),1)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_NonlinearAutocorr(x,[1,2,3,4,5])'),1)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_NonlinearAutocorr(x,[1,2,3,4,5])'),1)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_NonlinearAutocorr1510(self):
pyDrift1 = roundDict(CO_NonlinearAutocorr(x,[1,5,10,25]),1)
pyDrift2 = roundDict(CO_NonlinearAutocorr(y,[1,5,10,25]),1)
pyDrift3 = roundDict(CO_NonlinearAutocorr(hr,[1,5,10,25]),1)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_NonlinearAutocorr(x,[1,5,10,25])'),1)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_NonlinearAutocorr(x,[1,5,10,25])'),1)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_NonlinearAutocorr(x,[1,5,10,25])'),1)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_Embed2_Basic(self):
pyDrift1 = roundDict(CO_Embed2_Basic(x,1,.1),2)
pyDrift2 = roundDict(CO_Embed2_Basic(y,1,.1),2)
pyDrift3 = roundDict(CO_Embed2_Basic(hr,1,.1),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_Embed2_Basic(x,1)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_Embed2_Basic(x,1)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_Embed2_Basic(x,1)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_Embed2_Basic5(self):
pyDrift1 = roundDict(CO_Embed2_Basic(x,5,.1),2)
pyDrift2 = roundDict(CO_Embed2_Basic(y,5,.1),2)
pyDrift3 = roundDict(CO_Embed2_Basic(hr,5,.1),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_Embed2_Basic(x,5)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_Embed2_Basic(x,5)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_Embed2_Basic(x,5)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_Embed2_Basictau(self):
pyDrift1 = roundDict(CO_Embed2_Basic(x,'tau',.1),2)
pyDrift2 = roundDict(CO_Embed2_Basic(y,'tau',.1),2)
pyDrift3 = roundDict(CO_Embed2_Basic(hr,'tau',.1),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_Embed2_Basic(x,"tau")'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_Embed2_Basic(x,"tau")'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_Embed2_Basic(x,"tau")'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_CO_RM_AMInformation(self):
pyDrift1 = roundDict(CO_RM_AMInformation(x),2)
pyDrift2 = roundDict(CO_RM_AMInformation(y),2)
pyDrift3 = roundDict(CO_RM_AMInformation(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('CO_RM_AMInformation(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('CO_RM_AMInformation(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('CO_RM_AMInformation(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i])
self.assertTrue(result)
class test_EN_functions(unittest.TestCase):
def test_EN_ApEn(self):
pyDrift1 = roundDict(EN_ApEn(x),2)
pyDrift2 = roundDict(EN_ApEn(y),2)
pyDrift3 = roundDict(EN_ApEn(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('EN_ApEn(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('EN_ApEn(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('EN_ApEn(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i])
self.assertTrue(result)
def test_EN_CID(self):
pyDrift1 = roundDict(EN_CID(x),2)
pyDrift2 = roundDict(EN_CID(y),2)
pyDrift3 = roundDict(EN_CID(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('EN_CID(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('EN_CID(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('EN_CID(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_EN_PermEn(self):
pyDrift1 = roundDict(EN_PermEn(x),2)
pyDrift2 = roundDict(EN_PermEn(y),2)
pyDrift3 = roundDict(EN_PermEn(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('EN_PermEn(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('EN_PermEn(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('EN_PermEn(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_EN_DistributionEntropy(self):
pyDrift1 = roundDict(EN_DistributionEntropy(x),2)
pyDrift2 = roundDict(EN_DistributionEntropy(y),2)
pyDrift3 = roundDict(EN_DistributionEntropy(hr),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('EN_DistributionEntropy(x)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('EN_DistributionEntropy(x)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('EN_DistributionEntropy(x)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i],.05)
self.assertTrue(result)
def test_EN_PermEn36(self):
pyDrift1 = roundDict(EN_PermEn(x,3,6),2)
pyDrift2 = roundDict(EN_PermEn(y,3,6),2)
pyDrift3 = roundDict(EN_PermEn(hr,3,6),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('EN_PermEn(x,3,6)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('EN_PermEn(x,3,6)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('EN_PermEn(x,3,6)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_EN_PermEn73(self):
pyDrift1 = roundDict(EN_PermEn(x,7,3),2)
pyDrift2 = roundDict(EN_PermEn(y,7,3),2)
pyDrift3 = roundDict(EN_PermEn(hr,7,3),2)
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('EN_PermEn(x,7,3)'),2)
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('EN_PermEn(x,7,3)'),2)
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('EN_PermEn(x,7,3)'),2)
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
# According to comments on matlab website theirs is wrong
# found another implementation online that our python implementation
# matches
# def test_EN_SampEn(self):
#
#
# pyDrift1 = roundDict(EN_SampEn(x)['Sample Entropy'],2)
# pyDrift2 = roundDict(EN_SampEn(y)['Sample Entropy'],2)
# pyDrift3 = roundDict(EN_SampEn(hr)['Sample Entropy'],2)
#
# eng.workspace['x'] = matlab.double(list(x))
# matDrift1 = roundDict(eng.eval('EN_SampEn(x)'),2)
#
# eng.workspace['x'] = matlab.double(list(y))
# matDrift2 = roundDict(eng.eval('EN_SampEn(x)'),2)
#
# eng.workspace['x'] = matlab.double(list(hr))
# matDrift3 = roundDict(eng.eval('EN_SampEn(x)'),2)
#
# pythonResults = [pyDrift1,pyDrift2,pyDrift3]
#
# matlabResults = [matDrift1,matDrift2,matDrift3]
#
# self.assertEqual(pythonResults,matlabResults)
class test_IN_functions(unittest.TestCase):
'''
Theirs won't run on valid inputs
'''
# def test_IN_AutoMutualInfo(self):
#
# pyDrift1 = roundDict(IN_AutoMutualInfo(x),2)
# pyDrift2 = roundDict(IN_AutoMutualInfo(y),2)
# pyDrift3 = roundDict(IN_AutoMutualInfo(hr),2)
#
# eng.workspace['x'] = matlab.double(list(x))
# matDrift1 = roundDict(eng.eval('IN_AutoMutualInfo(x)'),2)
#
# eng.workspace['x'] = matlab.double(list(y))
# matDrift2 = roundDict(eng.eval('IN_AutoMutualInfo(x)'),2)
#
# eng.workspace['x'] = matlab.double(list(hr))
# matDrift3 = roundDict(eng.eval('IN_AutoMutualInfo(x)'),2)
#
# pythonResults = [pyDrift1,pyDrift2,pyDrift3]
#
# matlabResults = [matDrift1,matDrift2,matDrift3]
#
# self.assertEqual(pythonResults,matlabResults)
class test_SY_functions(unittest.TestCase):
def test_SY_DriftingMean(self):
pyDrift1 = roundDict(SY_DriftingMean(x))
pyDrift2 = roundDict(SY_DriftingMean(y))
pyDrift3 = roundDict(SY_DriftingMean(hr))
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('SY_DriftingMean(x)'))
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('SY_DriftingMean(x)'))
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('SY_DriftingMean(x)'))
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
#Currently will fail b/c I didn't add SampEn cause it takes too long
def test_SY_DynWin(self):
pyDrift1 = roundDict(SY_DynWin(x))
pyDrift2 = roundDict(SY_DynWin(y))
pyDrift3 = roundDict(SY_DynWin(hr))
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('SY_DynWin(x)'))
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('SY_DynWin(x)'))
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('SY_DynWin(x)'))
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
self.assertEqual(pythonResults,matlabResults)
def test_ST_LocalExtrema(self):
pyDrift1 = roundDict(ST_LocalExtrema(x,"l",50))
pyDrift2 = roundDict(ST_LocalExtrema(y,"l",50))
pyDrift3 = roundDict(ST_LocalExtrema(hr,"l",50))
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('ST_LocalExtrema(x,"l",50)'))
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('ST_LocalExtrema(x,"l",50)'))
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('ST_LocalExtrema(x,"l",50)'))
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
#huge b/c matlab periodogram function doesnt match pythons
for i in range(3):
result = result and closeEnough(pythonResults[i],matlabResults[i],.05)
self.assertTrue(result)
def test_ST_LocalExtreman(self):
pyDrift1 = roundDict(ST_LocalExtrema(x,"n",50))
pyDrift2 = roundDict(ST_LocalExtrema(y,"n",50))
pyDrift3 = roundDict(ST_LocalExtrema(hr,"n",50))
eng.workspace['x'] = matlab.double(list(x))
matDrift1 = roundDict(eng.eval('ST_LocalExtrema(x,"n",50)'))
eng.workspace['x'] = matlab.double(list(y))
matDrift2 = roundDict(eng.eval('ST_LocalExtrema(x,"n",50)'))
eng.workspace['x'] = matlab.double(list(hr))
matDrift3 = roundDict(eng.eval('ST_LocalExtrema(x,"n",50)'))
pythonResults = [pyDrift1,pyDrift2,pyDrift3]
matlabResults = [matDrift1,matDrift2,matDrift3]
result = True
#huge b/c matlab periodogram function doesnt match pythons
for i in range(3):