From a9a1130bef106ebc2d28f956e89f68d162a58df0 Mon Sep 17 00:00:00 2001 From: Fa-Hsuan Lin Date: Sat, 6 Jan 2024 18:47:39 -0500 Subject: [PATCH] Update README.md --- README.md | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/README.md b/README.md index 0020759..ba00fc2 100644 --- a/README.md +++ b/README.md @@ -47,6 +47,17 @@ The web sites of our lab are [here](http://linbrainlab.org) and [here at Sunnybr - [MEG analysis](https://github.com/fahsuanlin/labmanual/wiki/03.-MEG-analysis-stream) for the data collected at Academia Sinica ## Stereotatic EEG (SEEG) + +Some pages are from [fhlin_toolbox repo](https://github.com/fahsuanlin/fhlin_toolbox). + +- [Register the location of SEEG electrodes using post-implantation MRI; Step I](https://github.com/fahsuanlin/fhlin_toolbox/wiki/SEEG:-register-electrodes-to-MRI) + +- [Register the location of SEEG electrodes using post-implantation MRI; Step II](https://github.com/fahsuanlin/fhlin_toolbox/wiki/SEEG:-register-electrodes-to-MRI-(II)) + +- [Register the location of SEEG electrodes using post-implantation CT](https://github.com/fahsuanlin/fhlin_toolbox/wiki/SEEG:-register-electrodes-to-MRI-with-the-guidance-by-CT) + +- [Visualize the registered electrodes](https://github.com/fahsuanlin/fhlin_toolbox/wiki/SEEG:-view-registered-electrodes) + - [Data analysis over electrodes](https://github.com/fahsuanlin/labmanual/wiki/07.-SEEG-electrode-analysis) - [SEEG source analysis: individual](https://github.com/fahsuanlin/labmanual/wiki/06.-SEEG-source-modeling) @@ -63,6 +74,25 @@ The web sites of our lab are [here](http://linbrainlab.org) and [here at Sunnybr - [Data collection](https://github.com/fahsuanlin/labmanual/wiki/30.-Bruker-7T-scanning) +## Visualization + +These are pages from [fhlin_toolbox repo](https://github.com/fahsuanlin/fhlin_toolbox). + +- [Show 3D brain model for an individual](https://github.com/fahsuanlin/fhlin_toolbox/wiki/Render-brain) + +- [Show 3D brain model and orthogonal slicse for an indvidual](https://github.com/fahsuanlin/fhlin_toolbox/wiki/Render-brain-and-check-brain-coordinates). This includes showing cortical labels created automatically by FreeSurfer (.annot file). + +- [Show and create a region-of-interest on a 3D brain model](https://github.com/fahsuanlin/fhlin_toolbox/wiki/Render-brain-and-create-a-region-of-interest). + +- [Show 3D brain model with cortical labels](https://github.com/fahsuanlin/fhlin_toolbox/wiki/Render-brain-labels-and-annotation). These labels are either from individual label files (*.label) or a collection of labels in an annotation file (.annot). + +- [Show 3D brain model with overlay](https://github.com/fahsuanlin/fhlin_toolbox/wiki/Render-brain-with-an-overlay). The overlay is typically fMRI results, which is a static image here. + +- [Show 3D brain model with dynamic overlay](https://github.com/fahsuanlin/fhlin_toolbox/wiki/Render-brain-with-a-dynamic-overlay). The overlay is typically fMRI results, which can be a static image or a collection of images over time. + +- [Show or examine the spatial co-registration between structural MRI and fMRI](https://github.com/fahsuanlin/fhlin_toolbox/wiki/Render-or-register-brain-with-a-volume-overlay) + + ## Sample data - [EEG-MRI: steady-state visual evoked potentials](https://github.com/fahsuanlin/labmanual/wiki/21.-Sample-data:-Steady-state-visual-potential)