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Error when predicting contacts for heterodimer #674

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AnjaliSetiya opened this issue Apr 8, 2024 · 0 comments
Open

Error when predicting contacts for heterodimer #674

AnjaliSetiya opened this issue Apr 8, 2024 · 0 comments

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@AnjaliSetiya
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AnjaliSetiya commented Apr 8, 2024

I am trying to follow the tutorial on contact prediction from esm example files
https://github.com/facebookresearch/esm/blob/main/examples/contact_prediction.ipynb
but i have some multimeric proteins also, as there is not much info available for those, i follow the steps as mentioned for esmfold that is to use a ':' seperator.
Screenshot from 2024-04-08 17-54-36. But when trying to predict contacts
Screenshot from 2024-04-08 17-57-13.
It doesn't accept the seperator, Let me know how do we predict contact probablities,/contact predictions for multimeric proteins. how should fasta be given for the same.

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