Blocked Gibbs Sampling Generation

[martinez-zacharya]

Is there a script or colab notebook for the gibbs sampling protein generation method from this paper? https://www.biorxiv.org/content/10.1101/2022.12.21.521521v1.full#F1

[tony-res]

TRILL has Gibbs sampling implemented.

ESM2 Gibbs: Using Gibbs sampling, you can generate synthetic proteins from a finetuned ESM2 model
$ trill example_4 1 generate ESM2_Gibbs --finetuned /path/to/finetuned_model.pt --esm2_arch esm2_t30_150M_UR

[tony-res]

Oh. It's Zachary asking. Well, I guess you knew that answer, then!