diff --git a/Makefile b/Makefile
deleted file mode 100644
index 7515d21401c..00000000000
--- a/Makefile
+++ /dev/null
@@ -1,9 +0,0 @@
-%.html: %.md template.html metadata.yml assets/css/style.css
- pandoc "$<" --template "$<" --metadata-file=metadata.yml | pandoc --template "template.html" --metadata-file=metadata.yml -c "assets/css/style.css" --write=html5 -o "$@"
- @sed -i 's/<\/a> | <a href/<\/a> |\n<a href/g' "$@"
-
-tutorials.md: tutorials.py tutorials_header.md build/doc/tutorials/Readme.md
- python3 "$<"
-
-videos.md: videos.py videos_header.md build/doc/tutorials/Readme.md
- python3 "$<"
diff --git a/Readme.html b/Readme.html
new file mode 100644
index 00000000000..43405e793a9
--- /dev/null
+++ b/Readme.html
@@ -0,0 +1,86 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="espresso-documentation">ESPResSo documentation</h1>
+<p>These GitHub Pages provide the user manuals of every ESPResSo release
+since 4.0.0 as well as the user guide, tutorials and doxygen
+documentation of the development branch of ESPResSo (updated during
+nightly builds). When adding a new release, update the
+<code>latest_release</code> variable in file
+<code>metadata.yml</code>.</p>
+<p>The material is generated automatically from ESPResSo sources
+licensed under the <a
+href="https://www.gnu.org/licenses/gpl-3.0.en.html">GNU GPL 3</a>,
+unless stated otherwise. The theme files were obtained from
+jekyll-theme-slate, available at <a
+href="https://github.com/pages-themes/slate">pages-themes/slate</a> and
+licensed under the <a
+href="http://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0
+Universal</a>. The Jekyll template was generated with Jekyll 3.9.0.</p>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/Readme.md b/Readme.md
deleted file mode 100644
index de464b91a13..00000000000
--- a/Readme.md
+++ /dev/null
@@ -1,13 +0,0 @@
-# ESPResSo documentation
-
-These GitHub Pages provide the user manuals of every ESPResSo release since
-4.0.0 as well as the user guide, tutorials and doxygen documentation of the
-development branch of ESPResSo (updated during nightly builds). When adding
-a new release, update the `latest_release` variable in file `metadata.yml`.
-
-The material is generated automatically from ESPResSo sources licensed under
-the [GNU GPL 3](https://www.gnu.org/licenses/gpl-3.0.en.html), unless stated
-otherwise. The theme files were obtained from jekyll-theme-slate, available
-at [pages-themes/slate](https://github.com/pages-themes/slate) and licensed
-under the [CC0 1.0 Universal](http://creativecommons.org/publicdomain/zero/1.0/).
-The Jekyll template was generated with Jekyll 3.9.0.
diff --git a/index.html b/index.html
new file mode 100644
index 00000000000..3905911f095
--- /dev/null
+++ b/index.html
@@ -0,0 +1,102 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="user-guide">User guide</h1>
+<ul>
+<li>For <a href="doc/index.html">ESPResSo devel</a></li>
+<li>For <a href="doc4.2.2/index.html">ESPResSo 4.2.2</a></li>
+</ul>
+<h1 id="tutorials">Tutorials</h1>
+<ul>
+<li>For <a href="tutorials.html">ESPResSo devel</a></li>
+<li>For <a href="tutorials4.2.2.html">ESPResSo 4.2.2</a></li>
+<li><a href="videos.html">Online videos</a></li>
+</ul>
+<h1 id="development">Development</h1>
+<ul>
+<li><a href="https://github.com/espressomd/espresso/wiki">Developer’s
+Guide</a></li>
+<li><a href="dox/index.html">Doxygen documentation</a></li>
+</ul>
+<h1 id="further-documentation">Further documentation</h1>
+<ul>
+<li><a href="quickstart.html">Quickstart</a></li>
+<li><a
+href="https://github.com/espressomd/espresso/wiki/Installation-FAQ">Installation
+FAQ</a></li>
+<li><a
+href="https://github.com/espressomd/espresso/wiki/Filing-bug-reports">Filing
+bug reports</a></li>
+<li><a href="http://espressomd.org/wordpress/?page_id=79">User’s Mailing
+List</a> (<a
+href="http://lists.nongnu.org/archive/html/espressomd-users/">archives</a>)</li>
+<li><a href="http://espressomd.org/wordpress/">ESPResSo official
+website</a></li>
+</ul>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/index.md b/index.md
deleted file mode 100644
index 9950bed4534..00000000000
--- a/index.md
+++ /dev/null
@@ -1,28 +0,0 @@
-# User guide
-
-* For [ESPResSo devel](doc/index.html)
-$if(latest_release)$
-* For [ESPResSo $latest_release$](doc$latest_release$/index.html)
-$endif$
-
-# Tutorials
-
-* For [ESPResSo devel](tutorials.html)
-$if(latest_release)$
-* For [ESPResSo $latest_release$](tutorials$latest_release$.html)
-$endif$
-* [Online videos](videos.html)
-
-# Development
-
-* [Developer's Guide](https://github.com/espressomd/espresso/wiki)
-* [Doxygen documentation](dox/index.html)
-
-# Further documentation
-
-* [Quickstart](quickstart.html)
-* [Installation FAQ](https://github.com/espressomd/espresso/wiki/Installation-FAQ)
-* [Filing bug reports](https://github.com/espressomd/espresso/wiki/Filing-bug-reports)
-* [User's Mailing List](http://espressomd.org/wordpress/?page_id=79)
- ([archives](http://lists.nongnu.org/archive/html/espressomd-users/))
-* [ESPResSo official website](http://espressomd.org/wordpress/)
diff --git a/quickstart.html b/quickstart.html
new file mode 100644
index 00000000000..c5f93a28f3e
--- /dev/null
+++ b/quickstart.html
@@ -0,0 +1,82 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="quickstart">Quickstart</h1>
+<p>New users should follow these steps to get <strong>ESPResSo</strong>
+running:</p>
+<ol type="1">
+<li>Check the <a href="doc/installation.html#requirements">installation
+requirements</a> for your operating system</li>
+<li><a href="https://espressomd.org/wordpress/download/">Download
+<strong>ESPResSo</strong></a></li>
+<li><a href="doc/installation.html#quick-installation">Build
+<strong>ESPResSo</strong></a></li>
+<li>Run your script with <code>./pypresso my_script.py</code></li>
+</ol>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/quickstart.md b/quickstart.md
deleted file mode 100644
index 7f4dd3a6581..00000000000
--- a/quickstart.md
+++ /dev/null
@@ -1,8 +0,0 @@
-# Quickstart
-
-New users should follow these steps to get **ESPResSo** running:
-
-1. Check the [installation requirements](doc/installation.html#requirements) for your operating system
-2. [Download **ESPResSo**](https://espressomd.org/wordpress/download/)
-3. [Build **ESPResSo**](doc/installation.html#quick-installation)
-4. Run your script with `./pypresso my_script.py`
diff --git a/tutorials.html b/tutorials.html
new file mode 100644
index 00000000000..b1356aefaf6
--- /dev/null
+++ b/tutorials.html
@@ -0,0 +1,155 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="tutorials">Tutorials</h1>
+<p>All tutorials are available as Jupyter notebooks and can be found in
+<code>doc/tutorials/</code> in the source code and <a
+href="https://github.com/espressomd/espresso/tree/python/doc/tutorials">on
+GitHub</a>.</p>
+<p><a href="https://mybinder.org/v2/gh/jngrad/espresso-binder/HEAD"><img
+src="https://mybinder.org/badge_logo.svg"
+alt="Launch with Binder" /></a> <a
+href="https://gitpod.io/#https://github.com/espressomd/espresso"><img
+src="https://img.shields.io/badge/launch-Gitpod-908a85?logo=gitpod"
+alt="Launch with Gitpod" /></a></p>
+<h3 id="introductory-tutorials">Introductory tutorials</h3>
+<ul>
+<li><strong>Simulate a simple Lennard-Jones liquid</strong><br />
+Modelling of a single-component and a two-component Lennard-Jones
+liquid.<br />
+<a href="tutorials/lennard_jones/lennard_jones.html">Guide</a></li>
+<li><strong>Error analysis</strong><br />
+Statistical analysis of simulation results<br />
+Guide <a href="tutorials/error_analysis/error_analysis_part1.html">Part
+1</a> | <a
+href="tutorials/error_analysis/error_analysis_part2.html">Part
+2</a></li>
+<li><strong>Visualization</strong><br />
+Using the online visualizers of ESPResSo.<br />
+<a href="tutorials/visualization/visualization.html">Guide</a></li>
+</ul>
+<h3 id="intermediate-tutorials">Intermediate tutorials</h3>
+<ul>
+<li><strong>Charged systems</strong><br />
+Modelling of ion condensation around a charged rod.<br />
+<a href="tutorials/charged_system/charged_system.html">Guide</a></li>
+<li><strong>Langevin dynamics</strong><br />
+Modelling of Brownian motion and measurement of diffusion
+coefficients.<br />
+<a
+href="tutorials/langevin_dynamics/langevin_dynamics.html">Guide</a></li>
+<li><strong>Ferrofluid</strong><br />
+Modelling of a monolayer ferrofluid system.<br />
+Guide <a href="tutorials/ferrofluid/ferrofluid_part1.html">Part 1</a> |
+<a href="tutorials/ferrofluid/ferrofluid_part2.html">Part 2</a> | <a
+href="tutorials/ferrofluid/ferrofluid_part3.html">Part 3</a></li>
+<li><strong>Lattice-Boltzmann</strong><br />
+Simulations including hydrodynamic interactions using the
+Lattice-Boltzmann method.<br />
+Guide <a
+href="tutorials/lattice_boltzmann/lattice_boltzmann_theory.html">Part
+1</a> | <a
+href="tutorials/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.html">Part
+2</a> | <a
+href="tutorials/lattice_boltzmann/lattice_boltzmann_sedimentation.html">Part
+3</a></li>
+<li><strong>Polymers</strong><br />
+Modelling polymers with hydrodynamic interactions.<br />
+<a href="tutorials/polymers/polymers.html">Guide</a></li>
+<li><strong>Raspberry electrophoresis</strong><br />
+Extended objects in a Lattice-Boltzmann fluid, raspberry
+particles.<br />
+<a
+href="tutorials/raspberry_electrophoresis/raspberry_electrophoresis.html">Guide</a></li>
+</ul>
+<h3 id="advanced-tutorials">Advanced tutorials</h3>
+<ul>
+<li><strong>Active matter</strong><br />
+Modelling of self-propelling particles.<br />
+<a href="tutorials/active_matter/active_matter.html">Guide</a></li>
+<li><strong>Electrokinetics</strong><br />
+Modelling electrokinetics together with hydrodynamic interactions.<br />
+<a href="tutorials/electrokinetics/electrokinetics.html">Guide</a></li>
+<li><strong>Electrodes</strong><br />
+Modelling electrodes and measuring differential capacitance with the ELC
+method.<br />
+<a href="tutorials/electrodes/electrodes_part1.html">Part 1</a> | <a
+href="tutorials/electrodes/electrodes_part2.html">Part 2</a></li>
+<li><strong>Constant pH method</strong><br />
+Modelling an acid dissociation curve using the constant pH method.<br />
+<a href="tutorials/constant_pH/constant_pH.html">Guide</a></li>
+<li><strong>Widom particle insertion method</strong><br />
+Measuring the excess chemical potential of a salt solution using the
+Widom particle insertion method.<br />
+<a href="tutorials/widom_insertion/widom_insertion.html">Guide</a></li>
+<li><strong>Grand-Canonical Monte Carlo</strong> Simulating a
+polyelectrolyte solution coupled to a reservoir of salt. <a
+href="tutorials/grand_canonical_monte_carlo/grand_canonical_monte_carlo.html">Guide</a></li>
+</ul>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/tutorials.py b/tutorials.py
deleted file mode 100644
index 4365da5cf1a..00000000000
--- a/tutorials.py
+++ /dev/null
@@ -1,41 +0,0 @@
-#
-# Copyright (C) 2021 The ESPResSo project
-#
-# This file is part of ESPResSo.
-#
-# ESPResSo is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# ESPResSo is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
-#
-"""
-This script generates the landing page for tutorials.
-"""
-
-import re
-
-marker_begin = '[comment]: # (Begin of tutorials landing page)'
-marker_end = '[comment]: # (End of tutorials landing page)'
-
-with open('build/doc/tutorials/Readme.md') as f:
- content = f.read()
-
-assert marker_begin in content, f'Readme.md is missing "{marker_begin}"'
-assert marker_end in content, f'Readme.md is missing "{marker_end}"'
-tutorial_descriptions = content.split(marker_begin)[1].split(marker_end)[0]
-tutorial_descriptions = tutorial_descriptions.replace('.ipynb', '.html')
-tutorial_descriptions = re.sub(r"\]\((?!https?://)", '](tutorials/', tutorial_descriptions)
-
-with open('tutorials_header.md', 'r') as f:
- tutorial_header = f.read()
-
-with open('tutorials.md', 'w') as f:
- f.write(tutorial_header + tutorial_descriptions)
diff --git a/tutorials4.1.4.html b/tutorials4.1.4.html
new file mode 100644
index 00000000000..2d6962e1a73
--- /dev/null
+++ b/tutorials4.1.4.html
@@ -0,0 +1,146 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="tutorials-for-espresso-4.1.4">Tutorials for ESPResSo 4.1.4</h1>
+<p>All tutorials are available as Jupyter notebooks and can be found in
+<code>doc/tutorials/</code> in the source code and <a
+href="https://github.com/espressomd/espresso/tree/4.1.4/doc/tutorials">on
+GitHub</a>.</p>
+<h4 id="introductory-tutorials">Introductory tutorials</h4>
+<ul>
+<li><strong>Simulate a simple Lennard-Jones liquid</strong><br />
+Modelling of a single-component and a two-component Lennard-Jones
+liquid.<br />
+<a
+href="tutorials4.1.4/01-lennard_jones/01-lennard_jones.html">Guide</a></li>
+<li><strong>Visualization</strong><br />
+Using the online visualizers of ESPResSo.<br />
+<a
+href="tutorials4.1.4/08-visualization/08-visualization.html">Guide</a></li>
+</ul>
+<h4 id="intermediate-tutorials">Intermediate tutorials</h4>
+<ul>
+<li><strong>Charged systems</strong><br />
+Modelling of charged systems such as ionic crystals.<br />
+Guide <a
+href="tutorials4.1.4/02-charged_system/02-charged_system-1.html">Part
+1</a> <a
+href="tutorials4.1.4/02-charged_system/02-charged_system-2.html">Part
+2</a></li>
+<li><strong>Ferrofluid</strong><br />
+Modelling of a monolayer ferrofluid system.<br />
+Guide <a
+href="tutorials4.1.4/11-ferrofluid/11-ferrofluid_part1.html">Part 1</a>
+| <a href="tutorials4.1.4/11-ferrofluid/11-ferrofluid_part2.html">Part
+2</a> | <a
+href="tutorials4.1.4/11-ferrofluid/11-ferrofluid_part3.html">Part
+3</a></li>
+<li><strong>Lattice-Boltzmann</strong><br />
+Simulations including hydrodynamic interactions using the
+Lattice-Boltzmann method.<br />
+Guide <a
+href="tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part1.html">Part
+1</a> | <a
+href="tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part2.html">Part
+2</a> | <a
+href="tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part3.html">Part
+3</a> | <a
+href="tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part4.html">Part
+4</a></li>
+<li><strong>Raspberry electrophoresis</strong><br />
+Extended objects in a Lattice-Boltzmann fluid, raspberry
+particles.<br />
+<a
+href="tutorials4.1.4/05-raspberry_electrophoresis/05-raspberry_electrophoresis.html">Guide</a></li>
+</ul>
+<h4 id="advanced-tutorials">Advanced tutorials</h4>
+<ul>
+<li><strong>Active matter</strong><br />
+Modelling of self-propelling particles.<br />
+<a
+href="tutorials4.1.4/06-active_matter/06-active_matter.html">Guide</a> |
+<a
+href="https://github.com/espressomd/espresso/tree/4.1.4/doc/tutorials/06-active_matter/EXERCISES">Exercises</a>
+| <a
+href="https://github.com/espressomd/espresso/tree/4.1.4/doc/tutorials/06-active_matter/SOLUTIONS">Solutions</a></li>
+<li><strong>Electrokinetics</strong><br />
+Modelling electrokinetics together with hydrodynamic interactions.<br />
+<a
+href="tutorials4.1.4/07-electrokinetics/07-electrokinetics.html">Guide</a></li>
+<li><strong>Constant pH method</strong><br />
+Modelling an acid dissociation curve using the constant pH method.<br />
+<a
+href="tutorials4.1.4/12-constant_pH/12-constant_pH.html">Guide</a></li>
+<li><strong>Reaction Ensemble method</strong><br />
+Modelling an acid dissociation curve using the reaction ensemble
+method.<br />
+<a
+href="tutorials4.1.4/10-reaction_ensemble/10-reaction_ensemble.html">Guide</a></li>
+</ul>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/tutorials4.1.4.md b/tutorials4.1.4.md
deleted file mode 100644
index 3b37b27d3b4..00000000000
--- a/tutorials4.1.4.md
+++ /dev/null
@@ -1,55 +0,0 @@
-# Tutorials for ESPResSo 4.1.4
-
-All tutorials are available as Jupyter notebooks and can be found in `doc/tutorials/` in the
-source code and [on GitHub](https://github.com/espressomd/espresso/tree/4.1.4/doc/tutorials).
-
-#### Introductory tutorials
-
-* **Simulate a simple Lennard-Jones liquid**
- Modelling of a single-component and a two-component Lennard-Jones liquid.
- [Guide](tutorials4.1.4/01-lennard_jones/01-lennard_jones.html)
-* **Visualization**
- Using the online visualizers of ESPResSo.
- [Guide](tutorials4.1.4/08-visualization/08-visualization.html)
-
-#### Intermediate tutorials
-
-* **Charged systems**
- Modelling of charged systems such as ionic crystals.
- Guide
- [Part 1](tutorials4.1.4/02-charged_system/02-charged_system-1.html)
- [Part 2](tutorials4.1.4/02-charged_system/02-charged_system-2.html)
-* **Ferrofluid**
- Modelling of a monolayer ferrofluid system.
- Guide
- [Part 1](tutorials4.1.4/11-ferrofluid/11-ferrofluid_part1.html) |
- [Part 2](tutorials4.1.4/11-ferrofluid/11-ferrofluid_part2.html) |
- [Part 3](tutorials4.1.4/11-ferrofluid/11-ferrofluid_part3.html)
-* **Lattice-Boltzmann**
- Simulations including hydrodynamic interactions using the Lattice-Boltzmann method.
- Guide
- [Part 1](tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part1.html) |
- [Part 2](tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part2.html) |
- [Part 3](tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part3.html) |
- [Part 4](tutorials4.1.4/04-lattice_boltzmann/04-lattice_boltzmann_part4.html)
-* **Raspberry electrophoresis**
- Extended objects in a Lattice-Boltzmann fluid, raspberry particles.
- [Guide](tutorials4.1.4/05-raspberry_electrophoresis/05-raspberry_electrophoresis.html)
-
-#### Advanced tutorials
-
-* **Active matter**
- Modelling of self-propelling particles.
- [Guide](tutorials4.1.4/06-active_matter/06-active_matter.html) |
- [Exercises](https://github.com/espressomd/espresso/tree/4.1.4/doc/tutorials/06-active_matter/EXERCISES) |
- [Solutions](https://github.com/espressomd/espresso/tree/4.1.4/doc/tutorials/06-active_matter/SOLUTIONS)
-* **Electrokinetics**
- Modelling electrokinetics together with hydrodynamic interactions.
- [Guide](tutorials4.1.4/07-electrokinetics/07-electrokinetics.html)
-* **Constant pH method**
- Modelling an acid dissociation curve using the constant pH method.
- [Guide](tutorials4.1.4/12-constant_pH/12-constant_pH.html)
-* **Reaction Ensemble method**
- Modelling an acid dissociation curve using the reaction ensemble method.
- [Guide](tutorials4.1.4/10-reaction_ensemble/10-reaction_ensemble.html)
-
diff --git a/tutorials4.2.0.html b/tutorials4.2.0.html
new file mode 100644
index 00000000000..a4a53d6df9f
--- /dev/null
+++ b/tutorials4.2.0.html
@@ -0,0 +1,141 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="tutorials">Tutorials</h1>
+<p>All tutorials are available as Jupyter notebooks and can be found in
+<code>doc/tutorials/</code> in the source code and <a
+href="https://github.com/espressomd/espresso/tree/4.2.0/doc/tutorials">on
+GitHub</a>.</p>
+<h3 id="introductory-tutorials">Introductory tutorials</h3>
+<ul>
+<li><strong>Simulate a simple Lennard-Jones liquid</strong><br />
+Modelling of a single-component and a two-component Lennard-Jones
+liquid.<br />
+<a href="tutorials4.2.0/lennard_jones/lennard_jones.html">Guide</a></li>
+<li><strong>Error analysis</strong><br />
+Statistical analysis of simulation results<br />
+Guide <a
+href="tutorials4.2.0/error_analysis/error_analysis_part1.html">Part
+1</a> | <a
+href="tutorials4.2.0/error_analysis/error_analysis_part2.html">Part
+2</a></li>
+<li><strong>Visualization</strong><br />
+Using the online visualizers of ESPResSo.<br />
+<a href="tutorials4.2.0/visualization/visualization.html">Guide</a></li>
+</ul>
+<h3 id="intermediate-tutorials">Intermediate tutorials</h3>
+<ul>
+<li><strong>Charged systems</strong><br />
+Modelling of ion condensation around a charged rod.<br />
+<a
+href="tutorials4.2.0/charged_system/charged_system.html">Guide</a></li>
+<li><strong>Langevin dynamics</strong><br />
+Modelling of Brownian motion and measurement of diffusion
+coefficients.<br />
+<a
+href="tutorials4.2.0/langevin_dynamics/langevin_dynamics.html">Guide</a></li>
+<li><strong>Ferrofluid</strong><br />
+Modelling of a monolayer ferrofluid system.<br />
+Guide <a href="tutorials4.2.0/ferrofluid/ferrofluid_part1.html">Part
+1</a> |
+<a href="tutorials4.2.0/ferrofluid/ferrofluid_part2.html">Part
+2</a> |
+<a href="tutorials4.2.0/ferrofluid/ferrofluid_part3.html">Part
+3</a></li>
+<li><strong>Lattice-Boltzmann</strong><br />
+Simulations including hydrodynamic interactions using the
+Lattice-Boltzmann method.<br />
+Guide <a
+href="tutorials4.2.0/lattice_boltzmann/lattice_boltzmann_theory.html">Part
+1</a> | <a
+href="tutorials4.2.0/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.html">Part
+2</a></li>
+<li><strong>Polymers</strong><br />
+Modelling polymers with hydrodynamic interactions.<br />
+<a href="tutorials4.2.0/polymers/polymers.html">Guide</a></li>
+<li><strong>Raspberry electrophoresis</strong><br />
+Extended objects in a Lattice-Boltzmann fluid, raspberry
+particles.<br />
+<a
+href="tutorials4.2.0/raspberry_electrophoresis/raspberry_electrophoresis.html">Guide</a></li>
+</ul>
+<h3 id="advanced-tutorials">Advanced tutorials</h3>
+<ul>
+<li><strong>Active matter</strong><br />
+Modelling of self-propelling particles.<br />
+<a href="tutorials4.2.0/active_matter/active_matter.html">Guide</a></li>
+<li><strong>Electrokinetics</strong><br />
+Modelling electrokinetics together with hydrodynamic interactions.<br />
+<a
+href="tutorials4.2.0/electrokinetics/electrokinetics.html">Guide</a></li>
+<li><strong>Constant pH method</strong><br />
+Modelling an acid dissociation curve using the constant pH method.<br />
+<a href="tutorials4.2.0/constant_pH/constant_pH.html">Guide</a></li>
+</ul>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/tutorials4.2.0.md b/tutorials4.2.0.md
deleted file mode 100644
index 454baff3014..00000000000
--- a/tutorials4.2.0.md
+++ /dev/null
@@ -1,58 +0,0 @@
-# Tutorials
-
-All tutorials are available as Jupyter notebooks and can be found in `doc/tutorials/` in the
-source code and [on GitHub](https://github.com/espressomd/espresso/tree/4.2.0/doc/tutorials).
-
-
-### Introductory tutorials
-
-* **Simulate a simple Lennard-Jones liquid**
- Modelling of a single-component and a two-component Lennard-Jones liquid.
- [Guide](tutorials4.2.0/lennard_jones/lennard_jones.html)
-* **Error analysis**
- Statistical analysis of simulation results
- Guide
- [Part 1](tutorials4.2.0/error_analysis/error_analysis_part1.html) |
- [Part 2](tutorials4.2.0/error_analysis/error_analysis_part2.html)
-* **Visualization**
- Using the online visualizers of ESPResSo.
- [Guide](tutorials4.2.0/visualization/visualization.html)
-
-### Intermediate tutorials
-
-* **Charged systems**
- Modelling of ion condensation around a charged rod.
- [Guide](tutorials4.2.0/charged_system/charged_system.html)
-* **Langevin dynamics**
- Modelling of Brownian motion and measurement of diffusion coefficients.
- [Guide](tutorials4.2.0/langevin_dynamics/langevin_dynamics.html)
-* **Ferrofluid**
- Modelling of a monolayer ferrofluid system.
- Guide
- [Part 1](tutorials4.2.0/ferrofluid/ferrofluid_part1.html) |
- [Part 2](tutorials4.2.0/ferrofluid/ferrofluid_part2.html) |
- [Part 3](tutorials4.2.0/ferrofluid/ferrofluid_part3.html)
-* **Lattice-Boltzmann**
- Simulations including hydrodynamic interactions using the Lattice-Boltzmann method.
- Guide
- [Part 1](tutorials4.2.0/lattice_boltzmann/lattice_boltzmann_theory.html) |
- [Part 2](tutorials4.2.0/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.html)
-* **Polymers**
- Modelling polymers with hydrodynamic interactions.
- [Guide](tutorials4.2.0/polymers/polymers.html)
-* **Raspberry electrophoresis**
- Extended objects in a Lattice-Boltzmann fluid, raspberry particles.
- [Guide](tutorials4.2.0/raspberry_electrophoresis/raspberry_electrophoresis.html)
-
-### Advanced tutorials
-
-* **Active matter**
- Modelling of self-propelling particles.
- [Guide](tutorials4.2.0/active_matter/active_matter.html)
-* **Electrokinetics**
- Modelling electrokinetics together with hydrodynamic interactions.
- [Guide](tutorials4.2.0/electrokinetics/electrokinetics.html)
-* **Constant pH method**
- Modelling an acid dissociation curve using the constant pH method.
- [Guide](tutorials4.2.0/constant_pH/constant_pH.html)
-
diff --git a/tutorials4.2.1.html b/tutorials4.2.1.html
new file mode 100644
index 00000000000..07526c953a1
--- /dev/null
+++ b/tutorials4.2.1.html
@@ -0,0 +1,141 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="tutorials">Tutorials</h1>
+<p>All tutorials are available as Jupyter notebooks and can be found in
+<code>doc/tutorials/</code> in the source code and <a
+href="https://github.com/espressomd/espresso/tree/4.2.1/doc/tutorials">on
+GitHub</a>.</p>
+<h3 id="introductory-tutorials">Introductory tutorials</h3>
+<ul>
+<li><strong>Simulate a simple Lennard-Jones liquid</strong><br />
+Modelling of a single-component and a two-component Lennard-Jones
+liquid.<br />
+<a href="tutorials4.2.1/lennard_jones/lennard_jones.html">Guide</a></li>
+<li><strong>Error analysis</strong><br />
+Statistical analysis of simulation results<br />
+Guide <a
+href="tutorials4.2.1/error_analysis/error_analysis_part1.html">Part
+1</a> | <a
+href="tutorials4.2.1/error_analysis/error_analysis_part2.html">Part
+2</a></li>
+<li><strong>Visualization</strong><br />
+Using the online visualizers of ESPResSo.<br />
+<a href="tutorials4.2.1/visualization/visualization.html">Guide</a></li>
+</ul>
+<h3 id="intermediate-tutorials">Intermediate tutorials</h3>
+<ul>
+<li><strong>Charged systems</strong><br />
+Modelling of ion condensation around a charged rod.<br />
+<a
+href="tutorials4.2.1/charged_system/charged_system.html">Guide</a></li>
+<li><strong>Langevin dynamics</strong><br />
+Modelling of Brownian motion and measurement of diffusion
+coefficients.<br />
+<a
+href="tutorials4.2.1/langevin_dynamics/langevin_dynamics.html">Guide</a></li>
+<li><strong>Ferrofluid</strong><br />
+Modelling of a monolayer ferrofluid system.<br />
+Guide <a href="tutorials4.2.1/ferrofluid/ferrofluid_part1.html">Part
+1</a> |
+<a href="tutorials4.2.1/ferrofluid/ferrofluid_part2.html">Part
+2</a> |
+<a href="tutorials4.2.1/ferrofluid/ferrofluid_part3.html">Part
+3</a></li>
+<li><strong>Lattice-Boltzmann</strong><br />
+Simulations including hydrodynamic interactions using the
+Lattice-Boltzmann method.<br />
+Guide <a
+href="tutorials4.2.1/lattice_boltzmann/lattice_boltzmann_theory.html">Part
+1</a> | <a
+href="tutorials4.2.1/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.html">Part
+2</a></li>
+<li><strong>Polymers</strong><br />
+Modelling polymers with hydrodynamic interactions.<br />
+<a href="tutorials4.2.1/polymers/polymers.html">Guide</a></li>
+<li><strong>Raspberry electrophoresis</strong><br />
+Extended objects in a Lattice-Boltzmann fluid, raspberry
+particles.<br />
+<a
+href="tutorials4.2.1/raspberry_electrophoresis/raspberry_electrophoresis.html">Guide</a></li>
+</ul>
+<h3 id="advanced-tutorials">Advanced tutorials</h3>
+<ul>
+<li><strong>Active matter</strong><br />
+Modelling of self-propelling particles.<br />
+<a href="tutorials4.2.1/active_matter/active_matter.html">Guide</a></li>
+<li><strong>Electrokinetics</strong><br />
+Modelling electrokinetics together with hydrodynamic interactions.<br />
+<a
+href="tutorials4.2.1/electrokinetics/electrokinetics.html">Guide</a></li>
+<li><strong>Constant pH method</strong><br />
+Modelling an acid dissociation curve using the constant pH method.<br />
+<a href="tutorials4.2.1/constant_pH/constant_pH.html">Guide</a></li>
+</ul>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/tutorials4.2.1.md b/tutorials4.2.1.md
deleted file mode 100644
index d7a704cb181..00000000000
--- a/tutorials4.2.1.md
+++ /dev/null
@@ -1,57 +0,0 @@
-# Tutorials
-
-All tutorials are available as Jupyter notebooks and can be found in `doc/tutorials/` in the
-source code and [on GitHub](https://github.com/espressomd/espresso/tree/4.2.1/doc/tutorials).
-
-
-### Introductory tutorials
-
-* **Simulate a simple Lennard-Jones liquid**
- Modelling of a single-component and a two-component Lennard-Jones liquid.
- [Guide](tutorials4.2.1/lennard_jones/lennard_jones.html)
-* **Error analysis**
- Statistical analysis of simulation results
- Guide
- [Part 1](tutorials4.2.1/error_analysis/error_analysis_part1.html) |
- [Part 2](tutorials4.2.1/error_analysis/error_analysis_part2.html)
-* **Visualization**
- Using the online visualizers of ESPResSo.
- [Guide](tutorials4.2.1/visualization/visualization.html)
-
-### Intermediate tutorials
-
-* **Charged systems**
- Modelling of ion condensation around a charged rod.
- [Guide](tutorials4.2.1/charged_system/charged_system.html)
-* **Langevin dynamics**
- Modelling of Brownian motion and measurement of diffusion coefficients.
- [Guide](tutorials4.2.1/langevin_dynamics/langevin_dynamics.html)
-* **Ferrofluid**
- Modelling of a monolayer ferrofluid system.
- Guide
- [Part 1](tutorials4.2.1/ferrofluid/ferrofluid_part1.html) |
- [Part 2](tutorials4.2.1/ferrofluid/ferrofluid_part2.html) |
- [Part 3](tutorials4.2.1/ferrofluid/ferrofluid_part3.html)
-* **Lattice-Boltzmann**
- Simulations including hydrodynamic interactions using the Lattice-Boltzmann method.
- Guide
- [Part 1](tutorials4.2.1/lattice_boltzmann/lattice_boltzmann_theory.html) |
- [Part 2](tutorials4.2.1/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.html)
-* **Polymers**
- Modelling polymers with hydrodynamic interactions.
- [Guide](tutorials4.2.1/polymers/polymers.html)
-* **Raspberry electrophoresis**
- Extended objects in a Lattice-Boltzmann fluid, raspberry particles.
- [Guide](tutorials4.2.1/raspberry_electrophoresis/raspberry_electrophoresis.html)
-
-### Advanced tutorials
-
-* **Active matter**
- Modelling of self-propelling particles.
- [Guide](tutorials4.2.1/active_matter/active_matter.html)
-* **Electrokinetics**
- Modelling electrokinetics together with hydrodynamic interactions.
- [Guide](tutorials4.2.1/electrokinetics/electrokinetics.html)
-* **Constant pH method**
- Modelling an acid dissociation curve using the constant pH method.
- [Guide](tutorials4.2.1/constant_pH/constant_pH.html)
diff --git a/tutorials4.2.2.html b/tutorials4.2.2.html
new file mode 100644
index 00000000000..76237655ca2
--- /dev/null
+++ b/tutorials4.2.2.html
@@ -0,0 +1,141 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="tutorials">Tutorials</h1>
+<p>All tutorials are available as Jupyter notebooks and can be found in
+<code>doc/tutorials/</code> in the source code and <a
+href="https://github.com/espressomd/espresso/tree/python/doc/tutorials">on
+GitHub</a>.</p>
+<h3 id="introductory-tutorials">Introductory tutorials</h3>
+<ul>
+<li><strong>Simulate a simple Lennard-Jones liquid</strong><br />
+Modelling of a single-component and a two-component Lennard-Jones
+liquid.<br />
+<a href="tutorials4.2.2/lennard_jones/lennard_jones.html">Guide</a></li>
+<li><strong>Error analysis</strong><br />
+Statistical analysis of simulation results<br />
+Guide <a
+href="tutorials4.2.2/error_analysis/error_analysis_part1.html">Part
+1</a> | <a
+href="tutorials4.2.2/error_analysis/error_analysis_part2.html">Part
+2</a></li>
+<li><strong>Visualization</strong><br />
+Using the online visualizers of ESPResSo.<br />
+<a href="tutorials4.2.2/visualization/visualization.html">Guide</a></li>
+</ul>
+<h3 id="intermediate-tutorials">Intermediate tutorials</h3>
+<ul>
+<li><strong>Charged systems</strong><br />
+Modelling of ion condensation around a charged rod.<br />
+<a
+href="tutorials4.2.2/charged_system/charged_system.html">Guide</a></li>
+<li><strong>Langevin dynamics</strong><br />
+Modelling of Brownian motion and measurement of diffusion
+coefficients.<br />
+<a
+href="tutorials4.2.2/langevin_dynamics/langevin_dynamics.html">Guide</a></li>
+<li><strong>Ferrofluid</strong><br />
+Modelling of a monolayer ferrofluid system.<br />
+Guide <a href="tutorials4.2.2/ferrofluid/ferrofluid_part1.html">Part
+1</a> |
+<a href="tutorials4.2.2/ferrofluid/ferrofluid_part2.html">Part
+2</a> |
+<a href="tutorials4.2.2/ferrofluid/ferrofluid_part3.html">Part
+3</a></li>
+<li><strong>Lattice-Boltzmann</strong><br />
+Simulations including hydrodynamic interactions using the
+Lattice-Boltzmann method.<br />
+Guide <a
+href="tutorials4.2.2/lattice_boltzmann/lattice_boltzmann_theory.html">Part
+1</a> | <a
+href="tutorials4.2.2/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.html">Part
+2</a></li>
+<li><strong>Polymers</strong><br />
+Modelling polymers with hydrodynamic interactions.<br />
+<a href="tutorials4.2.2/polymers/polymers.html">Guide</a></li>
+<li><strong>Raspberry electrophoresis</strong><br />
+Extended objects in a Lattice-Boltzmann fluid, raspberry
+particles.<br />
+<a
+href="tutorials4.2.2/raspberry_electrophoresis/raspberry_electrophoresis.html">Guide</a></li>
+</ul>
+<h3 id="advanced-tutorials">Advanced tutorials</h3>
+<ul>
+<li><strong>Active matter</strong><br />
+Modelling of self-propelling particles.<br />
+<a href="tutorials4.2.2/active_matter/active_matter.html">Guide</a></li>
+<li><strong>Electrokinetics</strong><br />
+Modelling electrokinetics together with hydrodynamic interactions.<br />
+<a
+href="tutorials4.2.2/electrokinetics/electrokinetics.html">Guide</a></li>
+<li><strong>Constant pH method</strong><br />
+Modelling an acid dissociation curve using the constant pH method.<br />
+<a href="tutorials4.2.2/constant_pH/constant_pH.html">Guide</a></li>
+</ul>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/tutorials4.2.2.md b/tutorials4.2.2.md
deleted file mode 100644
index 7d6fa2bfcd1..00000000000
--- a/tutorials4.2.2.md
+++ /dev/null
@@ -1,58 +0,0 @@
-# Tutorials
-
-All tutorials are available as Jupyter notebooks and can be found in `doc/tutorials/` in the
-source code and [on GitHub](https://github.com/espressomd/espresso/tree/python/doc/tutorials).
-
-
-### Introductory tutorials
-
-* **Simulate a simple Lennard-Jones liquid**
- Modelling of a single-component and a two-component Lennard-Jones liquid.
- [Guide](tutorials4.2.2/lennard_jones/lennard_jones.html)
-* **Error analysis**
- Statistical analysis of simulation results
- Guide
- [Part 1](tutorials4.2.2/error_analysis/error_analysis_part1.html) |
- [Part 2](tutorials4.2.2/error_analysis/error_analysis_part2.html)
-* **Visualization**
- Using the online visualizers of ESPResSo.
- [Guide](tutorials4.2.2/visualization/visualization.html)
-
-### Intermediate tutorials
-
-* **Charged systems**
- Modelling of ion condensation around a charged rod.
- [Guide](tutorials4.2.2/charged_system/charged_system.html)
-* **Langevin dynamics**
- Modelling of Brownian motion and measurement of diffusion coefficients.
- [Guide](tutorials4.2.2/langevin_dynamics/langevin_dynamics.html)
-* **Ferrofluid**
- Modelling of a monolayer ferrofluid system.
- Guide
- [Part 1](tutorials4.2.2/ferrofluid/ferrofluid_part1.html) |
- [Part 2](tutorials4.2.2/ferrofluid/ferrofluid_part2.html) |
- [Part 3](tutorials4.2.2/ferrofluid/ferrofluid_part3.html)
-* **Lattice-Boltzmann**
- Simulations including hydrodynamic interactions using the Lattice-Boltzmann method.
- Guide
- [Part 1](tutorials4.2.2/lattice_boltzmann/lattice_boltzmann_theory.html) |
- [Part 2](tutorials4.2.2/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.html)
-* **Polymers**
- Modelling polymers with hydrodynamic interactions.
- [Guide](tutorials4.2.2/polymers/polymers.html)
-* **Raspberry electrophoresis**
- Extended objects in a Lattice-Boltzmann fluid, raspberry particles.
- [Guide](tutorials4.2.2/raspberry_electrophoresis/raspberry_electrophoresis.html)
-
-### Advanced tutorials
-
-* **Active matter**
- Modelling of self-propelling particles.
- [Guide](tutorials4.2.2/active_matter/active_matter.html)
-* **Electrokinetics**
- Modelling electrokinetics together with hydrodynamic interactions.
- [Guide](tutorials4.2.2/electrokinetics/electrokinetics.html)
-* **Constant pH method**
- Modelling an acid dissociation curve using the constant pH method.
- [Guide](tutorials4.2.2/constant_pH/constant_pH.html)
-
diff --git a/tutorials_header.md b/tutorials_header.md
deleted file mode 100644
index 0ff547becb4..00000000000
--- a/tutorials_header.md
+++ /dev/null
@@ -1,4 +0,0 @@
-# Tutorials
-
-All tutorials are available as Jupyter notebooks and can be found in `doc/tutorials/` in the
-source code and [on GitHub](https://github.com/espressomd/espresso/tree/python/doc/tutorials).
diff --git a/videos.html b/videos.html
new file mode 100644
index 00000000000..1c83f6a4c67
--- /dev/null
+++ b/videos.html
@@ -0,0 +1,97 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en_US" xml:lang="en_US">
+<head>
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8" />
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width,maximum-scale=2">
+ <meta name="generator" content="pandoc" />
+ <style type="text/css">
+ </style>
+ <link rel="stylesheet" href="assets/css/style.css" />
+
+<!-- Begin Jekyll SEO tag v2.7.1 -->
+<title>ESPResSo documentation | ESPResSo</title>
+<meta name="generator" content="Jekyll v3.9.0">
+<meta property="og:title" content="ESPResSo documentation | ESPResSo">
+<meta property="og:locale" content="en_US">
+<meta name="description" content="Extensible Simulation Package for
+Research on Soft Matter Systems">
+<meta property="og:description" content="Extensible Simulation Package
+for Research on Soft Matter Systems">
+<link rel="canonical" href="https://espressomd.github.io">
+<meta property="og:url" content="https://espressomd.github.io">
+<meta property="og:site_name" content="ESPResSo">
+<script type="application/ld+json">
+{"description":"Extensible Simulation Package for Research on Soft
+Matter
+Systems","url":"https://espressomd.github.io","@type":"WebSite","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://github.com/espressomd/espresso/blob/python/doc/logo/logo_500x500.png"}},"headline":"ESPResSo
+documentation","name":"ESPResSo","@context":"https://schema.org"}</script>
+<!-- End Jekyll SEO tag -->
+</head>
+<body>
+
+
+ <!-- HEADER -->
+ <div id="header_wrap" class="outer">
+ <header class="inner">
+ <a id="forkme_banner" href="https://github.com/espressomd/espresso">View on GitHub</a>
+
+ <h1 id="project_title">ESPResSo</h1>
+ <h2 id="project_tagline">Extensible Simulation Package for Research on Soft Matter Systems</h2>
+
+ <section id="downloads">
+ <a class="tar_download_link" href="https://github.com/espressomd/espresso/releases/download/4.2.2/espresso-4.2.2.tar.gz">Download this project as a tar.gz file</a>
+ </section>
+
+ </header>
+ </div>
+
+ <!-- MAIN CONTENT -->
+ <div id="main_content_wrap" class="outer">
+ <section id="main_content" class="inner">
+
+<h1 id="online-videos">Online videos</h1>
+<p>Video lectures about <strong>ESPResSo</strong> are available on
+YouTube. Follow <a
+href="https://www.youtube.com/channel/UC6yzqhq2KrT-aDhPjcL-VNw/">ESPResSo
+Simulation Package</a> channel to get the latest updates!</p>
+<ul>
+<li><a href="https://www.youtube.com/watch?v=aP4jvpD-D1w">Introduction
+to ESPResSo</a></li>
+<li><a href="https://www.youtube.com/watch?v=dlvF1Zk3AAs">How to run
+ESPResSo inside Visual Studio Code</a></li>
+<li><a href="https://www.youtube.com/watch?v=I-HCxj9dUIU">Error
+Estimation in Time-Correlated Data</a></li>
+<li><a href="https://www.youtube.com/watch?v=YPryFf7MQTg">Electrostatic
+Algorithms</a></li>
+<li><a href="https://www.youtube.com/watch?v=wrnDg-3j2ik">Introduction
+to Charged Soft Matter</a></li>
+<li><a href="https://www.youtube.com/watch?v=64rNmTpoS1c">Managing
+Simulation Data</a></li>
+<li><a href="https://www.youtube.com/watch?v=wbL3EdVCbkI">Introduction
+to Ferrofluids</a></li>
+<li><a href="https://www.youtube.com/watch?v=vSF5-eciwms">Molecular
+Modelling of Polymers</a></li>
+<li><a href="https://www.youtube.com/watch?v=MUG-PSaMFVM">Simulating
+Chemical Reactions in ESPResSo</a></li>
+<li><a href="https://www.youtube.com/watch?v=jfk4feD7rFQ">Introduction
+to Lattice Boltzmann Method</a></li>
+</ul>
+
+ </section>
+ </div>
+
+ <!-- FOOTER -->
+ <div id="footer_wrap" class="outer">
+ <footer class="inner">
+
+ <p class="copyright">ESPResSo maintained by <a href="https://github.com/espressomd">espressomd</a></p>
+
+ <p>Published with <a href="https://pages.github.com/">GitHub Pages</a></p>
+ </footer>
+ </div>
+
+
+</body>
+</html>
diff --git a/videos.py b/videos.py
deleted file mode 100644
index b138d6e75c8..00000000000
--- a/videos.py
+++ /dev/null
@@ -1,37 +0,0 @@
-#
-# Copyright (C) 2021 The ESPResSo project
-#
-# This file is part of ESPResSo.
-#
-# ESPResSo is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# ESPResSo is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
-#
-"""
-This script generates the landing page for video lectures.
-"""
-
-marker_begin = '[comment]: # (Begin of videos landing page)'
-marker_end = '[comment]: # (End of videos landing page)'
-
-with open('build/doc/tutorials/Readme.md') as f:
- content = f.read()
-
-assert marker_begin in content, f'Readme.md is missing "{marker_begin}"'
-assert marker_end in content, f'Readme.md is missing "{marker_end}"'
-video_descriptions = content.split(marker_begin)[1].split(marker_end)[0]
-
-with open('videos_header.md', 'r') as f:
- video_header = f.read()
-
-with open('videos.md', 'w') as f:
- f.write(video_header + video_descriptions)
diff --git a/videos_header.md b/videos_header.md
deleted file mode 100644
index 8cf07502e31..00000000000
--- a/videos_header.md
+++ /dev/null
@@ -1,5 +0,0 @@
-# Online videos
-
-Video lectures about **ESPResSo** are available on YouTube.
-Follow [ESPResSo Simulation Package](https://www.youtube.com/channel/UC6yzqhq2KrT-aDhPjcL-VNw/)
-channel to get the latest updates!