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ecology.yaml.lock
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ecology.yaml.lock
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install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: pampa_presabs
owner: ecology
revisions:
- 07b081730994
- 1ebb70b59037
- 8d8aec182fb1
- c9dfe4e20a45
tool_panel_section_label: Species abundance
- name: pampa_communitymetrics
owner: ecology
revisions:
- 2cd0a5a321c2
- 5bd7ddd7601f
- c67ece97d4b1
- ddd5b2e74b8b
tool_panel_section_label: Species abundance
- name: pampa_glmsp
owner: ecology
revisions:
- 0778efa9eb2e
- 6c14021f678e
- 7a69e1c8ba46
- c12897ba5f83
tool_panel_section_label: Species abundance
- name: pampa_glmcomm
owner: ecology
revisions:
- 44b9069775ca
- 8db02073b671
- b40fecef616b
- f0dc3958e65d
tool_panel_section_label: Species abundance
- name: pampa_plotglm
owner: ecology
revisions:
- 3ab852a7ff53
- 5ddca052c314
- c448e026f122
tool_panel_section_label: Species abundance
- name: stoc_maketable
owner: ecology
revisions:
- 22a784d2b0e0
- af4987066235
tool_panel_section_label: Species abundance
- name: stoc_filteringsp
owner: ecology
revisions:
- 2e45ae3b297a
- fd0687e91bf6
tool_panel_section_label: Species abundance
- name: stoc_mainglm
owner: ecology
revisions:
- a961be0a964f
- df3ce23d0d23
tool_panel_section_label: Species abundance
- name: stoc_mainglm_group
owner: ecology
revisions:
- 06a11044e089
- 8f953c35c787
tool_panel_section_label: Species abundance
- name: stoc_trend_indic
owner: ecology
revisions:
- 5c244408661f
- 916b49d725ba
tool_panel_section_label: Species abundance
- name: regionalgam_ab_index
owner: ecology
revisions:
- d0ee713d4758
tool_panel_section_label: Species abundance
- name: regionalgam_plot_trend
owner: ecology
revisions:
- 58ecd15e6836
tool_panel_section_label: Species abundance
- name: regionalgam_gls_adjusted
owner: ecology
revisions:
- e2bff90af491
tool_panel_section_label: Species abundance
- name: regionalgam_glmmpql
owner: ecology
revisions:
- f3e1b6d244a6
tool_panel_section_label: Species abundance
- name: regionalgam_autocor_acf
owner: ecology
revisions:
- b416a363a2d5
tool_panel_section_label: Species abundance
- name: regionalgam_flight_curve
owner: ecology
revisions:
- fff507f00b2b
tool_panel_section_label: Species abundance
- name: regionalgam_gls
owner: ecology
revisions:
- a79f5f0f17ad
tool_panel_section_label: Species abundance
- name: tool_anonymization
owner: ecology
revisions:
- 726a387cfdc2
tool_panel_section_label: Biodiversity data exploration
- name: ecology_beta_diversity
owner: ecology
revisions:
- fb7b2cbd80bb
tool_panel_section_label: Biodiversity data exploration
- name: ecology_homogeneity_normality
owner: ecology
revisions:
- 3df8937fd6fd
tool_panel_section_label: Biodiversity data exploration
- name: ecology_link_between_var
owner: ecology
revisions:
- 8e8867bf491a
tool_panel_section_label: Biodiversity data exploration
- name: ecology_presence_abs_abund
owner: ecology
revisions:
- 4ed07d2d442b
tool_panel_section_label: Biodiversity data exploration
- name: ecology_stat_presence_abs
owner: ecology
revisions:
- 9a2e0195bb43
tool_panel_section_label: Biodiversity data exploration
- name: cb_div
owner: ecology
revisions:
- 5b31641e6d30
- abc8da8c12ba
tool_panel_section_label: Biodiversity data exploration
- name: cb_dissim
owner: ecology
revisions:
- 7e6cc3da1189
- 8dc082da41c1
- ffaa9a71b2d2
tool_panel_section_label: Compute indicators for turnover boulders fields
- name: cb_ivr
owner: ecology
revisions:
- 8c6142630659
- b67730406f1b
- bcbad4f83dec
tool_panel_section_label: Compute indicators for turnover boulders fields
- name: sample_seqs
owner: peterjc
revisions:
- 7c40a1fbc82e
- bdaefd241921
tool_panel_section_label: Filter and Sort
- name: xmlstarlet
owner: ecology
revisions:
- 4a9ac1df3278
tool_panel_section_label: Convert Formats
- name: datamash_ops
owner: iuc
revisions:
- 419027d822d6
- 4c07ddedc198
- 562f3c677828
- 746e8e4bf929
tool_panel_section_label: Join, Subtract and Group
- name: datamash_reverse
owner: iuc
revisions:
- 0f1724dd59d2
- 17e3b698dd52
- b8a457820315
- f198773344e4
tool_panel_section_label: Join, Subtract and Group
- name: datamash_transpose
owner: iuc
revisions:
- 22c2a1ac7ae3
- 374cb875d38a
- a513e3fbb4c5
- ac092723240d
- ba0c40780ecf
tool_panel_section_label: Join, Subtract and Group
- name: collection_column_join
owner: iuc
revisions:
- 071084070619
- 3ddd99c7efee
tool_panel_section_label: Join, Subtract and Group
- name: numeric_clustering
owner: bgruening
revisions:
- a3fd214e7555
tool_panel_section_label: Statistics
- name: text_processing
owner: bgruening
revisions:
- 0a8c6b61f0f4
- 12615d397df7
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- ddf54b12c295
- f46f0e4f75c4
- fb4ff3c42cd3
- fbf99087e067
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
revisions:
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- 13b6f0007d9e
- 427903d47026
- 464b9305180e
- 6595517c2dd8
- 6e8d94597139
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tool_panel_section_label: Text Manipulation
- name: prinseq
owner: iuc
revisions:
- 02befcb391f5
- 1ee282794de3
- 654b3a274ed5
tool_panel_section_label: FASTA/FASTQ
- name: split_file_on_column
owner: bgruening
revisions:
- 37a53100b67e
- b60f2452580e
- d4b5b70e82cb
- ff2a81aa3f08
tool_panel_section_label: Text Manipulation
- name: merge_cols
owner: devteam
revisions:
- ae7843d06f8f
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tool_panel_section_label: Text Manipulation
- name: coverage
owner: devteam
revisions:
- 4ef9819dc7fb
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tool_panel_section_label: Text Manipulation
- name: merge
owner: devteam
revisions:
- 381cd27bf67a
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tool_panel_section_label: Text Manipulation
- name: intersect
owner: devteam
revisions:
- 33b3f3688db4
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tool_panel_section_label: Text Manipulation
- name: join
owner: devteam
revisions:
- 718d04143c31
- a10f49d9218a
tool_panel_section_label: Text Manipulation
- name: subtract
owner: devteam
revisions:
- 0145969324c4
- 0427ca314f3d
tool_panel_section_label: Operate on Genomic Intervals
- name: subtract_query
owner: devteam
revisions:
- ff3901618482
tool_panel_section_label: Text Manipulation
- name: unique
owner: bgruening
revisions:
- 7ce75adb93be
tool_panel_section_label: Text Manipulation
- name: reshape2_melt
owner: iuc
revisions:
- 317ed0ee8bf2
tool_panel_section_label: Text Manipulation
- name: reshape2_cast
owner: iuc
revisions:
- d3b66a3a08ca
tool_panel_section_label: Text Manipulation
- name: add_value
owner: devteam
revisions:
- 023f0a3760b3
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tool_panel_section_label: Text Manipulation
- name: jq
owner: iuc
revisions:
- 5ff75eb1a893
tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
owner: devteam
revisions:
- 2e9f3b6ebfbc
tool_panel_section_label: Text Manipulation
- name: flanking_features
owner: devteam
revisions:
- 9f12b7e500f1
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tool_panel_section_label: Text Manipulation
- name: cluster
owner: devteam
revisions:
- 05696474ee89
- a126ec6ea0e4
tool_panel_section_label: Operate on Genomic Intervals
- name: get_flanks
owner: devteam
revisions:
- 077f404ae1bb
tool_panel_section_label: Text Manipulation
- name: complement
owner: devteam
revisions:
- 38c8bb402872
- 8b6c6ec55c6e
tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
owner: devteam
revisions:
- 2cedec3759e4
- 9c5ff4695c97
tool_panel_section_label: Operate on Genomic Intervals
- name: dna_filtering
owner: devteam
revisions:
- 549d2cb4c6f2
tool_panel_section_label: Text Manipulation
- name: column_order_header_sort
owner: iuc
revisions:
- 6ae9724caf4d
tool_panel_section_label: Text Manipulation
- name: column_remove_by_header
owner: iuc
revisions:
- 2040e4c2750a
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tool_panel_section_label: Text Manipulation
- name: metagenomeseq_normalization
owner: iuc
revisions:
- d16f7cc26516
tool_panel_section_label: Text Manipulation
- name: gff3_rebase
owner: iuc
revisions:
- 238981ed43b7
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tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
owner: bgruening
revisions:
- 6c6d26ff01ff
tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
owner: peterjc
revisions:
- 141612f8c3e3
- 83a19df00eab
- 85ef5f5a0562
tool_panel_section_label: Filter and Sort
- name: transformation
owner: ethevenot
revisions:
- cc0e9eff0de2
tool_panel_section_label: Metabolomics
- name: anova
owner: lecorguille
revisions:
- 102049093b7d
tool_panel_section_label: Statistics
- name: heatmap
owner: ethevenot
revisions:
- b1667c118127
tool_panel_section_label: Metabolomics
- name: univariate
owner: ethevenot
revisions:
- 5687435b182c
tool_panel_section_label: Metabolomics
- name: multivariate
owner: ethevenot
revisions:
- 5526f8258e8a
tool_panel_section_label: Metabolomics
- name: biosigner
owner: ethevenot
revisions:
- fa80bd02055f
tool_panel_section_label: Metabolomics
- name: seq_composition
owner: peterjc
revisions:
- 13be788233da
tool_panel_section_label: Statistics
- name: t_test_two_samples
owner: devteam
revisions:
- c2ffc9885b5a
tool_panel_section_label: Statistics
- name: plot_from_lda
owner: devteam
revisions:
- 08affc5d2aef
tool_panel_section_label: Statistics
- name: mine
owner: devteam
revisions:
- 5e2c89443c44
tool_panel_section_label: Statistics
- name: lda_analysis
owner: devteam
revisions:
- f0b6217f4a0c
tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
owner: devteam
revisions:
- 04cdbd00dcec
tool_panel_section_label: Statistics
- name: count_gff_features
owner: devteam
revisions:
- 188392a0d0a8
tool_panel_section_label: Statistics
- name: correlation
owner: devteam
revisions:
- 24e01abf9e34
tool_panel_section_label: Statistics
- name: venn_list
owner: peterjc
revisions:
- e13206029a72
tool_panel_section_label: Graph/Display Data
- name: scatterplot
owner: devteam
revisions:
- efda9a4a50e7
tool_panel_section_label: Graph/Display Data
- name: histogram
owner: devteam
revisions:
- 6f134426c2b0
- cdb9e89e2970
tool_panel_section_label: Graph/Display Data
- name: gmaj
owner: devteam
revisions:
- 2cd5ee197ec7
tool_panel_section_label: Graph/Display Data
- name: xy_plot
owner: devteam
revisions:
- ecb437f1d298
tool_panel_section_label: Graph/Display Data
- name: draw_stacked_barplots
owner: devteam
revisions:
- e997b710e38a
tool_panel_section_label: Graph/Display Data
- name: ggplot2_pca
owner: iuc
revisions:
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- 2bf238af068d
- 7e616a1bdb07
- 7f2ef7216cf8
- 90928b255abb
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tool_panel_section_label: Graph/Display Data
- name: pygenometracks
owner: iuc
revisions:
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tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap
owner: iuc
revisions:
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tool_panel_section_label: Graph/Display Data
- name: ggplot2_violin
owner: iuc
revisions:
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- 637cf21db396
- 9c52a8130729
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tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap2
owner: iuc
revisions:
- 374e9062d874
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tool_panel_section_label: Graph/Display Data
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owner: iuc
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tool_panel_section_label: Graph/Display Data
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tool_panel_section_label: Graph/Display Data
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owner: iuc
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tool_panel_section_label: Graph/Display Data
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owner: devteam
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tool_panel_section_label: Statistics
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owner: devteam
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tool_panel_section_label: Statistics
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owner: devteam
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tool_panel_section_label: Statistics
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owner: devteam
revisions:
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tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
owner: devteam
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tool_panel_section_label: Statistics
- name: sklearn_svm_classifier
owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Machine Learning
- name: sklearn_model_validation
owner: bgruening
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tool_panel_section_label: Machine Learning
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owner: bgruening
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tool_panel_section_label: Statistics
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owner: galaxyp
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tool_panel_section_label: Text Manipulation
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owner: kellrott
revisions:
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tool_panel_section_label: Text Manipulation
- name: fastq_groomer
owner: devteam
revisions:
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tool_panel_section_label: FASTA/FASTQ
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owner: devteam
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tool_panel_section_label: FASTA/FASTQ
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owner: iuc
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tool_panel_section_label: Quality Control
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owner: iuc
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tool_panel_section_label: Mothur
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owner: devteam
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tool_panel_section_label: FASTA/FASTQ
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owner: ecology
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tool_panel_section_label: GIS Data Handling
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owner: ecology
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tool_panel_section_label: GIS Data Handling
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tool_panel_section_label: GIS Data Handling
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tool_panel_section_label: GIS Data Handling
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owner: ecology
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tool_panel_section_label: GIS Data Handling
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owner: iuc
revisions:
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tool_panel_section_label: DNA Metabarcoding
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owner: iuc
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tool_panel_section_label: DNA Metabarcoding
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owner: iuc
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tool_panel_section_label: DNA Metabarcoding
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owner: iuc
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tool_panel_section_label: DNA Metabarcoding
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tool_panel_section_label: DNA Metabarcoding