You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
In order to clearly display PDB assembly predictions it seems that an additional column in the assembly panel would be a good solution to tag the EPPIC assembly that corresponds to the PDB prediction.
A special case occurs when the PDB prediction is an invalid assembly, in that case EPPIC will output that assembly as the last row and it is important to clearly show users that it is invalid. A simple way is to use the thumbnail field, which is anyway empty in those cases. There one could display a .png with the text "TOPOLOGICALLY INVALID".
The same approach could be employed to clearly tag disjoint assemblies: see e.g. the case of 1jap, where currently the same cartoon icon corresponds to both A,I and AI stoichiometries. An assembly like A,I should not have a graphical representation, but just a "DISJOINT ASSEMBLY" text in the thumbnail field.
The text was updated successfully, but these errors were encountered:
If we add a schematic thumbnail, that would make it clear which chains are interacting.
Alternately, what if we translate the subassemblies so that there is a visible gap between them? This could be either done by choosing a different lattice point (consistent with 3D), or just by composing multiple images for the thumbnail.
In order to clearly display PDB assembly predictions it seems that an additional column in the assembly panel would be a good solution to tag the EPPIC assembly that corresponds to the PDB prediction.
A special case occurs when the PDB prediction is an invalid assembly, in that case EPPIC will output that assembly as the last row and it is important to clearly show users that it is invalid. A simple way is to use the thumbnail field, which is anyway empty in those cases. There one could display a .png with the text "TOPOLOGICALLY INVALID".
The same approach could be employed to clearly tag disjoint assemblies: see e.g. the case of 1jap, where currently the same cartoon icon corresponds to both A,I and AI stoichiometries. An assembly like A,I should not have a graphical representation, but just a "DISJOINT ASSEMBLY" text in the thumbnail field.
The text was updated successfully, but these errors were encountered: