From 77d7ce7b5d7e68fe18c4b948414eca2249458b1f Mon Sep 17 00:00:00 2001 From: Andree Valle Campos Date: Sat, 30 Mar 2024 16:12:25 +0000 Subject: [PATCH 1/3] clean entry sentence --- learners/setup.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/learners/setup.md b/learners/setup.md index ac99b71b..a96fd509 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -4,7 +4,7 @@ title: Setup ## Motivation -**Outbreaks** appear with different diseases and in different contexts, but what all of them have in common are the key public health **questions** ([Cori et al. 2017](https://royalsocietypublishing.org/doi/10.1098/rstb.2016.0371#d1e605)). Common questions also require common data analysis **tasks**. +**Outbreaks** appear with different diseases and in different contexts, but what all of them have in common are the key public health **questions** ([Cori et al. 2017](https://royalsocietypublishing.org/doi/10.1098/rstb.2016.0371#d1e605)). We can relate these common key questions to common data analysis **tasks**. Epiverse-TRACE's aim is to provide an software ecosystem for [**outbreak analytics**](reference.md#outbreakanalytics) with integrated, generalisable and scalable community-driven software. We support the development of R packages, make the existing ones interoperable for the user experience, and stimulate a community of practice. From 5c335a4e3827cce9cc9274da8d12d78eab0bbc34 Mon Sep 17 00:00:00 2001 From: Andree Valle Campos Date: Sat, 30 Mar 2024 16:12:43 +0000 Subject: [PATCH 2/3] add incidence2 package as prep for rt episode --- learners/setup.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/learners/setup.md b/learners/setup.md index a96fd509..aada9816 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -108,6 +108,7 @@ if(!require("pak")) install.packages("pak") new_packages <- c( "EpiNow2", "epiverse-trace/epiparameter", + "incidence2", "tidyverse" ) @@ -123,6 +124,7 @@ When the installation has finished, you can try to load the packages by pasting ```r library(EpiNow2) library(epiparameter) +library(incidence2) library(tidyverse) ``` From 213c40c592277c8d275a01a34467a3ecf0eb6175 Mon Sep 17 00:00:00 2001 From: Andree Valle Campos Date: Sat, 30 Mar 2024 16:42:41 +0000 Subject: [PATCH 3/3] fix writing using grammarly --- learners/setup.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/learners/setup.md b/learners/setup.md index aada9816..ba8a3908 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -4,17 +4,17 @@ title: Setup ## Motivation -**Outbreaks** appear with different diseases and in different contexts, but what all of them have in common are the key public health **questions** ([Cori et al. 2017](https://royalsocietypublishing.org/doi/10.1098/rstb.2016.0371#d1e605)). We can relate these common key questions to common data analysis **tasks**. +**Outbreaks** appear with different diseases and in different contexts, but what all of them have in common is the key public health **questions** ([Cori et al. 2017](https://royalsocietypublishing.org/doi/10.1098/rstb.2016.0371#d1e605)). We can relate these key public health questions to outbreak data analysis **tasks**. -Epiverse-TRACE's aim is to provide an software ecosystem for [**outbreak analytics**](reference.md#outbreakanalytics) with integrated, generalisable and scalable community-driven software. We support the development of R packages, make the existing ones interoperable for the user experience, and stimulate a community of practice. +Epiverse-TRACE aims to provide a software ecosystem for [**outbreak analytics**](reference.md#outbreakanalytics) with integrated, generalisable and scalable community-driven software. We support the development of R packages, make the existing ones interoperable for the user experience, and stimulate a community of practice. ### Epiverse-TRACE tutorials -The tutorials are built around the workflow of outbreak analysis split into three stages: **Early tasks**, **Middle tasks** and **Late tasks**. +The tutorials are built around an outbreak analysis pipeline split into three stages: **Early tasks**, **Middle tasks** and **Late tasks**. ![An overview of the tutorial topics](https://epiverse-trace.github.io/task_pipeline-minimal.svg) -Each task has its own tutorial website. Task topics consist of one or more episodes. +Each task has its tutorial website. Each tutorial website consists of a set of episodes. | [Early task tutorials ➠](https://epiverse-trace.github.io/tutorials-early/) | [Middle task tutorials ➠](https://epiverse-trace.github.io/tutorials-middle) | [Late task tutorials ➠](https://epiverse-trace.github.io/tutorials-late/) | |---|---|---|