diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock index be78e40d..028832b9 100644 --- a/renv/profiles/lesson-requirements/renv.lock +++ b/renv/profiles/lesson-requirements/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.2.2", + "Version": "4.3.2", "Repositories": [ { "Name": "carpentries", @@ -41,13 +41,13 @@ }, "DiagrammeR": { "Package": "DiagrammeR", - "Version": "1.0.10", + "Version": "1.0.11", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "RColorBrewer", - "downloader", + "cli", "dplyr", "glue", "htmltools", @@ -62,10 +62,10 @@ "stringr", "tibble", "tidyr", - "viridis", + "viridisLite", "visNetwork" ], - "Hash": "f3de4a4878163a4629a528bbcc6e655d" + "Hash": "584c1e1cbb6f9b6c3b0f4ef0ad960966" }, "EpiNow2": { "Package": "EpiNow2", @@ -136,7 +136,7 @@ }, "QuickJSR": { "Package": "QuickJSR", - "Version": "1.1.0", + "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -144,7 +144,7 @@ "Rcpp", "jsonlite" ], - "Hash": "c2d96d1e0499a9f7e1e56d2d1dde0fa6" + "Hash": "765d4f4bcec02ed0663d4de3db23f6e5" }, "R.methodsS3": { "Package": "R.methodsS3", @@ -409,14 +409,14 @@ }, "cli": { "Package": "cli", - "Version": "3.6.1", + "Version": "3.6.2", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "utils" ], - "Hash": "89e6d8219950eac806ae0c489052048a" + "Hash": "1216ac65ac55ec0058a6f75d7ca0fd52" }, "clipr": { "Package": "clipr", @@ -509,14 +509,14 @@ }, "data.table": { "Package": "data.table", - "Version": "1.14.8", + "Version": "1.15.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "methods" ], - "Hash": "b4c06e554f33344e044ccd7fdca750a9" + "Hash": "cfbbb4aed6e78cd45f17123a9ec9981a" }, "dbplyr": { "Package": "dbplyr", @@ -560,96 +560,18 @@ ], "Hash": "0a861334beb4eb8ca0d24a27b28b6679" }, - "codetools": { - "Package": "codetools", - "Version": "0.2-19", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "c089a619a7fae175d149d89164f8c7d8" - }, - "colorspace": { - "Package": "colorspace", - "Version": "2.1-0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "methods", - "stats" - ], - "Hash": "f20c47fd52fae58b4e377c37bb8c335b" - }, - "countrycode": { - "Package": "countrycode", - "Version": "1.5.0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "bbc5ab5258e5ddf38f2cd2c5a7afa860" - }, - "cpp11": { - "Package": "cpp11", - "Version": "0.4.6", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "707fae4bbf73697ec8d85f9d7076c061" - }, - "crayon": { - "Package": "crayon", - "Version": "1.5.2", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "grDevices", - "methods", - "utils" - ], - "Hash": "e8a1e41acf02548751f45c718d55aa6a" - }, - "curl": { - "Package": "curl", - "Version": "5.1.0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "9123f3ef96a2c1a93927d828b2fe7d4c" - }, - "data.table": { - "Package": "data.table", - "Version": "1.14.8", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], - "Hash": "b4c06e554f33344e044ccd7fdca750a9" - }, "desc": { "Package": "desc", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "R6", "cli", - "rprojroot", "utils" ], - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21" + "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f" }, "digest": { "Package": "digest", @@ -699,17 +621,6 @@ ], "Hash": "80f374ef8500fcdc5d84a0345b837227" }, - "downloader": { - "Package": "downloader", - "Version": "0.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "digest", - "utils" - ], - "Hash": "f4f2a915e0dedbdf016a83b63477349f" - }, "dplyr": { "Package": "dplyr", "Version": "1.1.4", @@ -771,7 +682,7 @@ "RemoteUsername": "epiverse-trace", "RemoteRepo": "epidemics", "RemoteRef": "main", - "RemoteSha": "14b38b8ffbda1ddfdf1d90b2d26d6570e1830d89", + "RemoteSha": "f7e33b594768fb1fdac3fb97f9c075c7f9e9ce76", "RemoteHost": "api.github.com", "Requirements": [ "BH", @@ -785,7 +696,7 @@ "stats", "utils" ], - "Hash": "8dd3418be52e67270b62ae55a5ef6b6c" + "Hash": "3799aa7424ed199ea2f83a439655f1b1" }, "epiparameter": { "Package": "epiparameter", @@ -820,34 +731,15 @@ }, "fansi": { "Package": "fansi", - "Version": "1.0.5", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "utils" - ], - "Hash": "3e8583a60163b4bc1a80016e63b9959e" - }, - "farver": { - "Package": "farver", - "Version": "2.1.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "8106d78941f34855c440ddb946b8f7a5" - }, - "fansi": { - "Package": "fansi", - "Version": "1.0.5", + "Version": "1.0.6", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "grDevices", "utils" ], - "Hash": "3e8583a60163b4bc1a80016e63b9959e" + "Hash": "962174cf2aeb5b9eea581522286a911f" }, "farver": { "Package": "farver", @@ -1253,7 +1145,7 @@ }, "igraph": { "Package": "igraph", - "Version": "1.6.0", + "Version": "2.0.1.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1271,47 +1163,11 @@ "stats", "utils" ], - "Hash": "eef74fe28b747e52288ea9e1d3600034" - }, - "inline": { - "Package": "inline", - "Version": "0.3.19", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "methods" - ], - "Hash": "1deaf1de3eac7e1d3377954b3a283652" - }, - "isoband": { - "Package": "isoband", - "Version": "0.2.7", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "grid", - "utils" - ], - "Hash": "0080607b4a1a7b28979aecef976d8bc2" - }, - "httr": { - "Package": "httr", - "Version": "1.4.7", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "R6", - "curl", - "jsonlite", - "mime", - "openssl" - ], - "Hash": "ac107251d9d9fd72f0ca8049988f1d7f" + "Hash": "fb2999614d40fe7fd61cf569b66a2dbc" }, "incidence2": { "Package": "incidence2", - "Version": "2.2.1", + "Version": "2.2.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1322,7 +1178,7 @@ "pillar", "utils" ], - "Hash": "bd272708a92103589276504d9c3e8855" + "Hash": "0e1c66f6d72eacacbd8fe6ba1ed85cc9" }, "inline": { "Package": "inline", @@ -1357,13 +1213,13 @@ }, "jsonlite": { "Package": "jsonlite", - "Version": "1.8.7", + "Version": "1.8.8", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "methods" ], - "Hash": "266a20443ca13c65688b2116d5220f76" + "Hash": "e1b9c55281c5adc4dd113652d9e26768" }, "knitr": { "Package": "knitr", @@ -1418,43 +1274,6 @@ ], "Hash": "7c5e89f04e72d6611c77451f6331a091" }, - "labeling": { - "Package": "labeling", - "Version": "0.4.3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "graphics", - "stats" - ], - "Hash": "b64ec208ac5bc1852b285f665d6368b3" - }, - "lambda.r": { - "Package": "lambda.r", - "Version": "1.2.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "formatR" - ], - "Hash": "b1e925c4b9ffeb901bacf812cbe9a6ad" - }, - "lattice": { - "Package": "lattice", - "Version": "0.22-5", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "grid", - "stats", - "utils" - ], - "Hash": "7c5e89f04e72d6611c77451f6331a091" - }, "lifecycle": { "Package": "lifecycle", "Version": "1.0.4", @@ -1470,50 +1289,13 @@ }, "listenv": { "Package": "listenv", - "Version": "0.9.0", + "Version": "0.9.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R" ], - "Hash": "4fbd3679ec8ee169ba28d4b1ea7d0e8f" - }, - "loo": { - "Package": "loo", - "Version": "2.6.0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "checkmate", - "matrixStats", - "parallel", - "stats" - ], - "Hash": "e5c8f41731502a0e98f353da23f7ca30" - }, - "lubridate": { - "Package": "lubridate", - "Version": "1.9.3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "generics", - "methods", - "timechange" - ], - "Hash": "680ad542fbcf801442c83a6ac5a2126c" - }, - "listenv": { - "Package": "listenv", - "Version": "0.9.0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "4fbd3679ec8ee169ba28d4b1ea7d0e8f" + "Hash": "e2fca3e12e4db979dccc6e519b10a7ee" }, "loo": { "Package": "loo", @@ -1689,18 +1471,6 @@ ], "Hash": "2a0dc8c6adfb6f032e4d4af82d258ab5" }, - "pak": { - "Package": "pak", - "Version": "0.7.1", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "tools", - "utils" - ], - "Hash": "17c4c32b4bdc087508f35e8b7dcf4191" - }, "parallelly": { "Package": "parallelly", "Version": "1.36.0", @@ -1750,7 +1520,7 @@ }, "pkgbuild": { "Package": "pkgbuild", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1758,13 +1528,10 @@ "R6", "callr", "cli", - "crayon", "desc", - "prettyunits", - "processx", - "rprojroot" + "processx" ], - "Hash": "beb25b32a957a22a5c301a9e441190b3" + "Hash": "c0143443203205e6a2760ce553dafc24" }, "pkgconfig": { "Package": "pkgconfig", @@ -1776,27 +1543,6 @@ ], "Hash": "01f28d4278f15c76cddbea05899c5d6f" }, - "pkgload": { - "Package": "pkgload", - "Version": "1.3.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "cli", - "crayon", - "desc", - "fs", - "glue", - "methods", - "pkgbuild", - "rlang", - "rprojroot", - "utils", - "withr" - ], - "Hash": "876c618df5ae610be84356d5d7a5d124" - }, "plyr": { "Package": "plyr", "Version": "1.8.9", @@ -1820,16 +1566,16 @@ }, "processx": { "Package": "processx", - "Version": "3.8.2", + "Version": "3.8.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "R6", "ps", "utils" ], - "Hash": "3efbd8ac1be0296a46c55387aeace0f3" + "Hash": "82d48b1aec56084d9438dbf98087a7e9" }, "progress": { "Package": "progress", @@ -1887,7 +1633,7 @@ "Package": "ragg", "Version": "1.2.7", "Source": "Repository", - "Repository": "https://carpentries.r-universe.dev", + "Repository": "RSPM", "Requirements": [ "systemfonts", "textshaping" @@ -2016,16 +1762,6 @@ ], "Hash": "d65e35823c817f09f4de424fcdfa812a" }, - "rprojroot": { - "Package": "rprojroot", - "Version": "2.0.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "4c8415e0ec1e29f3f4f6fc108bef0144" - }, "rstan": { "Package": "rstan", "Version": "2.32.5", @@ -2051,7 +1787,7 @@ }, "rstantools": { "Package": "rstantools", - "Version": "2.3.1.1", + "Version": "2.4.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2061,7 +1797,7 @@ "stats", "utils" ], - "Hash": "32d3b6fe28162eb1c430697f95f40a83" + "Hash": "23813e635fcd210c33e154aa46d0a21a" }, "rstudioapi": { "Package": "rstudioapi", @@ -2185,71 +1921,18 @@ ], "Hash": "ffe1f9e95a4375530747b268f82b5086" }, - "scales": { - "Package": "scales", - "Version": "1.2.1", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "R6", - "RColorBrewer", - "farver", - "labeling", - "lifecycle", - "munsell", - "rlang", - "viridisLite" - ], - "Hash": "906cb23d2f1c5680b8ce439b44c6fa63" - }, - "socialmixr": { - "Package": "socialmixr", - "Version": "0.3.0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "countrycode", - "curl", - "data.table", - "fields", - "grDevices", - "httr", - "jsonlite", - "lubridate", - "oai", - "wpp2017", - "xml2" - ], - "Hash": "70e8d107f01e2c1b54154c3aa6200e00" - }, - "spam": { - "Package": "spam", - "Version": "2.10-0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "Rcpp", - "dotCall64", - "grid", - "methods" - ], - "Hash": "ffe1f9e95a4375530747b268f82b5086" - }, "stringi": { "Package": "stringi", - "Version": "1.8.2", + "Version": "1.8.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "stats", "tools", "utils" ], - "Hash": "e68c45f81639001af5f1b15cd3599bbd" + "Hash": "058aebddea264f4c99401515182e656a" }, "stringr": { "Package": "stringr", @@ -2407,43 +2090,6 @@ ], "Hash": "c5f3c201b931cd6474d17d8700ccb1c8" }, - "sys": { - "Package": "sys", - "Version": "3.4.2", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "3a1be13d68d47a8cd0bfd74739ca1555" - }, - "tibble": { - "Package": "tibble", - "Version": "3.2.1", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "fansi", - "lifecycle", - "magrittr", - "methods", - "pillar", - "pkgconfig", - "rlang", - "utils", - "vctrs" - ], - "Hash": "a84e2cc86d07289b3b6f5069df7a004c" - }, - "timechange": { - "Package": "timechange", - "Version": "0.2.0", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "8548b44f79a35ba1791308b61e6012d7" - }, "tinytex": { "Package": "tinytex", "Version": "0.49", @@ -2495,26 +2141,6 @@ ], "Hash": "303c19bfd970bece872f93a824e323d9" }, - "truncnorm": { - "Package": "truncnorm", - "Version": "1.0-9", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "ef5b32c5194351ff409dfb37ca9468f1" - }, - "utf8": { - "Package": "utf8", - "Version": "1.2.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "62b65c52671e6665f803ff02954446e9" - }, "vctrs": { "Package": "vctrs", "Version": "0.6.5", @@ -2529,19 +2155,6 @@ ], "Hash": "c03fa420630029418f7e6da3667aac4a" }, - "viridis": { - "Package": "viridis", - "Version": "0.6.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "ggplot2", - "gridExtra", - "viridisLite" - ], - "Hash": "80cd127bc8c9d3d9f0904ead9a9102f1" - }, "viridisLite": { "Package": "viridisLite", "Version": "0.4.2", @@ -2632,40 +2245,6 @@ ], "Hash": "ee42417b66554b8fb1ab000b6a7a6588" }, - "viridisLite": { - "Package": "viridisLite", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "c826c7c4241b6fc89ff55aaea3fa7491" - }, - "withr": { - "Package": "withr", - "Version": "2.5.1", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], - "Hash": "d77c6f74be05c33164e33fbc85540cae" - }, - "wpp2017": { - "Package": "wpp2017", - "Version": "1.2-3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "data.table" - ], - "Hash": "ee42417b66554b8fb1ab000b6a7a6588" - }, "xfun": { "Package": "xfun", "Version": "0.41", @@ -2681,7 +2260,7 @@ "Package": "xml2", "Version": "1.3.6", "Source": "Repository", - "Repository": "https://carpentries.r-universe.dev", + "Repository": "RSPM", "Requirements": [ "R", "cli", @@ -2690,23 +2269,12 @@ ], "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61" }, - "xml2": { - "Package": "xml2", - "Version": "1.3.5", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], - "Hash": "6c40e5cfcc6aefd88110666e18c31f40" - }, "yaml": { "Package": "yaml", - "Version": "2.3.7", + "Version": "2.3.8", "Source": "Repository", - "Repository": "CRAN", - "Hash": "0d0056cc5383fbc240ccd0cb584bf436" + "Repository": "RSPM", + "Hash": "29240487a071f535f5e5d5a323b7afbd" } } }