From 178d062fce89fcf9577ceefd7839e11c0c0c83af Mon Sep 17 00:00:00 2001
From: Andree Valle Campos <avallecam@gmail.com>
Date: Thu, 21 Mar 2024 17:13:33 +0000
Subject: [PATCH] move uncertainty task from episode 1 to episode 2

---
 episodes/delays-functions.Rmd |  2 ++
 episodes/delays-reuse.Rmd     | 15 ++++++++-------
 2 files changed, 10 insertions(+), 7 deletions(-)

diff --git a/episodes/delays-functions.Rmd b/episodes/delays-functions.Rmd
index 381aee09..77d51cb5 100644
--- a/episodes/delays-functions.Rmd
+++ b/episodes/delays-functions.Rmd
@@ -467,6 +467,8 @@ epinow_estimates <- epinow(
 plot(epinow_estimates)
 ```
 
+`{EpiNow2}` can also include the uncertainty around each summary statistic. We invite you to read this discussion on: [How to adapt `{epiparameter}` uncertainty entries to `{EpiNow2}`](https://github.com/epiverse-trace/epiparameter/discussions/218)? 
+
 ::::::::::::::::::::::::::
 
 :::::::::::::::::::::::::::::::::::::::::::  
diff --git a/episodes/delays-reuse.Rmd b/episodes/delays-reuse.Rmd
index 5ce0789d..4c595229 100644
--- a/episodes/delays-reuse.Rmd
+++ b/episodes/delays-reuse.Rmd
@@ -534,7 +534,7 @@ An interesting element is the `method_assess` nested entry, which refers to the
 covid_serialint$method_assess
 ```
 
-We will explore these concepts at the end!
+We will explore these concepts following episodes!
 
 ::::::::::::::::::::::::::::::
 
@@ -545,11 +545,11 @@ We will explore these concepts at the end!
 
 A severity parameter like the duration of hospitalisation could add to the information needed about the bed capacity in response to an outbreak ([Cori et al., 2017](https://royalsocietypublishing.org/doi/10.1098/rstb.2016.0371)).
 
-Also, `{EpiNow2}` can also include the uncertainty around each summary statistic, like the standard deviation of the standard deviation.
+<!-- Also, `{EpiNow2}` can also include the uncertainty around each summary statistic, like the standard deviation of the standard deviation. -->
 
 For Ebola: 
 
-- What is the reported *point estimate* and *uncertainty* of the mean duration of health care and case isolation?
+- What is the reported *point estimate* of the mean duration of health care and case isolation?
 
 ::::::::::::::::: hint
 
@@ -557,8 +557,6 @@ An informative delay should measure the time from symptom onset to recovery or d
 
 Find a way to access the whole `{epiparameter}` database and find how that delay may be stored.
 
-Explore within `<epidist>$summary_stats$...`.
-
 ::::::::::::::::::::::
 
 ::::::::::::::::: solution
@@ -577,14 +575,17 @@ ebola_severity <- epidist_db(
 
 # point estimate
 ebola_severity$summary_stats$mean
+```
+
+Check that for some `{epiparameter}` entries you will also have the *uncertainty* around the *point estimate* of each summary statistic:
+
+```{r}
 # 95% confidence intervals
 ebola_severity$summary_stats$mean_ci
 # limits of the confidence intervals
 ebola_severity$summary_stats$mean_ci_limits
 ```
 
-We invite you to read this discussion on: [How to adapt `{epiparamter}` uncertainty entries to `{EpiNow2}`](https://github.com/epiverse-trace/epiparameter/discussions/218)? 
-
 ::::::::::::::::::::::::::
 
 :::::::::::::::::::::::::::::::::::::::::::