diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 00000000..367a80b7 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,302 @@ +# ----------------------------------------------------------- +# CITATION file created with {cffr} R package, v0.5.0 +# See also: https://docs.ropensci.org/cffr/ +# ----------------------------------------------------------- + +cff-version: 1.2.0 +message: 'To cite package "readepi" in publications use:' +type: software +license: MIT +title: 'readepi: Read Data From Health Information Systems' +version: 0.1.0 +abstract: Data import from several health information systems ('HIS'). The current + version of the package covers 'HIS' such as 'MS SQL', 'MySQL', 'PostGRESQL' servers, + 'REDCap', 'DHIS2' and 'Fingertips'. +authors: +- family-names: Mané + given-names: Karim + email: lshkm1@lshtm.ac.uk + orcid: https://orcid.org/0000-0002-9892-2999 +preferred-citation: + type: manual + title: Read Data From Health Information Systems + authors: + - family-names: Mané + given-names: Karim + email: lshkm1@lshtm.ac.uk + orcid: https://orcid.org/0000-0002-9892-2999 + - family-names: Mohammed + given-names: Nuredin + - family-names: Bah + given-names: Bubacarr + - family-names: Ahadzie + given-names: Bankolé + - family-names: Degoot + given-names: Abdoelnaser + year: '2023' + url: https://github.com/epiverse-trace/readepi +repository-code: https://github.com/epiverse-trace/readepi +url: https://epiverse-trace.github.io/readepi +contact: +- family-names: Mané + given-names: Karim + email: lshkm1@lshtm.ac.uk + orcid: https://orcid.org/0000-0002-9892-2999 +keywords: +- data-import +- epidemiology +- epiverse +- health-information-systems +- r +- r-package +references: +- type: software + title: checkmate + abstract: 'checkmate: Fast and Versatile Argument Checks' + notes: Imports + url: https://mllg.github.io/checkmate/ + repository: https://CRAN.R-project.org/package=checkmate + authors: + - family-names: Lang + given-names: Michel + email: michellang@gmail.com + orcid: https://orcid.org/0000-0001-9754-0393 + year: '2023' +- type: software + title: DBI + abstract: 'DBI: R Database Interface' + notes: Imports + url: https://dbi.r-dbi.org + repository: https://CRAN.R-project.org/package=DBI + authors: + - name: R Special Interest Group on Databases (R-SIG-DB) + - family-names: Wickham + given-names: Hadley + - family-names: Müller + given-names: Kirill + email: krlmlr+r@mailbox.org + orcid: https://orcid.org/0000-0002-1416-3412 + year: '2023' +- type: software + title: dplyr + abstract: 'dplyr: A Grammar of Data Manipulation' + notes: Imports + url: https://dplyr.tidyverse.org + repository: https://CRAN.R-project.org/package=dplyr + authors: + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + orcid: https://orcid.org/0000-0003-4757-117X + - family-names: François + given-names: Romain + orcid: https://orcid.org/0000-0002-2444-4226 + - family-names: Henry + given-names: Lionel + - family-names: Müller + given-names: Kirill + orcid: https://orcid.org/0000-0002-1416-3412 + - family-names: Vaughan + given-names: Davis + email: davis@posit.co + orcid: https://orcid.org/0000-0003-4777-038X + year: '2023' +- type: software + title: fingertipsR + abstract: 'fingertipsR: Fingertips Data for Public Health' + notes: Imports + url: https://fingertips.phe.org.uk + authors: + - family-names: Westermann + given-names: Annabel + email: annabel.westermann@dhsc.gov.uk + - family-names: Fox + given-names: Sebastian + email: sebsfox@gmail.com + - family-names: Flowers + given-names: Julian + year: '2023' + version: '>= 1.0.10.9001' +- type: software + title: glue + abstract: 'glue: Interpreted String Literals' + notes: Imports + url: https://glue.tidyverse.org/ + repository: https://CRAN.R-project.org/package=glue + authors: + - family-names: Hester + given-names: Jim + orcid: https://orcid.org/0000-0002-2739-7082 + - family-names: Bryan + given-names: Jennifer + email: jenny@rstudio.com + orcid: https://orcid.org/0000-0002-6983-2759 + year: '2023' +- type: software + title: httr + abstract: 'httr: Tools for Working with URLs and HTTP' + notes: Imports + url: https://httr.r-lib.org/ + repository: https://CRAN.R-project.org/package=httr + authors: + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + year: '2023' +- type: software + title: magrittr + abstract: 'magrittr: A Forward-Pipe Operator for R' + notes: Imports + url: https://magrittr.tidyverse.org + repository: https://CRAN.R-project.org/package=magrittr + authors: + - family-names: Bache + given-names: Stefan Milton + email: stefan@stefanbache.dk + - family-names: Wickham + given-names: Hadley + email: hadley@rstudio.com + year: '2023' +- type: software + title: odbc + abstract: 'odbc: Connect to ODBC Compatible Databases (using the DBI Interface)' + notes: Imports + url: https://r-dbi.github.io/odbc/ + repository: https://CRAN.R-project.org/package=odbc + authors: + - family-names: Hester + given-names: Jim + - family-names: Wickham + given-names: Hadley + email: hadley@rstudio.com + - family-names: Gjoneski + given-names: Oliver + year: '2023' +- type: software + title: pool + abstract: 'pool: Object Pooling' + notes: Imports + url: http://rstudio.github.io/pool/ + repository: https://CRAN.R-project.org/package=pool + authors: + - family-names: Cheng + given-names: Joe + email: joe@posit.co + - family-names: Borges + given-names: Barbara + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + year: '2023' +- type: software + title: REDCapR + abstract: 'REDCapR: Interaction Between R and REDCap' + notes: Imports + url: https://ouhscbbmc.github.io/REDCapR/ + repository: https://CRAN.R-project.org/package=REDCapR + authors: + - family-names: Beasley + given-names: Will + email: wibeasley@hotmail.com + orcid: https://orcid.org/0000-0002-5613-5006 + year: '2023' +- type: software + title: RMySQL + abstract: 'RMySQL: Database Interface and ''MySQL'' Driver for R' + notes: Imports + url: https://downloads.mariadb.org/connector-c/ + repository: https://CRAN.R-project.org/package=RMySQL + authors: + - family-names: Ooms + given-names: Jeroen + email: jeroen@berkeley.edu + orcid: https://orcid.org/0000-0002-4035-0289 + - family-names: James + given-names: David + - family-names: DebRoy + given-names: Saikat + - family-names: Wickham + given-names: Hadley + email: hadley@rstudio.com + - family-names: Horner + given-names: Jeffrey + year: '2023' +- type: software + title: httptest + abstract: 'httptest: A Test Environment for HTTP Requests' + notes: Suggests + url: https://enpiar.com/r/httptest/ + repository: https://CRAN.R-project.org/package=httptest + authors: + - family-names: Richardson + given-names: Neal + email: neal.p.richardson@gmail.com + orcid: https://orcid.org/0009-0002-7992-3520 + year: '2023' +- type: software + title: knitr + abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R' + notes: Suggests + url: https://yihui.org/knitr/ + repository: https://CRAN.R-project.org/package=knitr + authors: + - family-names: Xie + given-names: Yihui + email: xie@yihui.name + orcid: https://orcid.org/0000-0003-0645-5666 + year: '2023' +- type: software + title: rmarkdown + abstract: 'rmarkdown: Dynamic Documents for R' + notes: Suggests + url: https://pkgs.rstudio.com/rmarkdown/ + repository: https://CRAN.R-project.org/package=rmarkdown + authors: + - family-names: Allaire + given-names: JJ + email: jj@posit.co + - family-names: Xie + given-names: Yihui + email: xie@yihui.name + orcid: https://orcid.org/0000-0003-0645-5666 + - family-names: Dervieux + given-names: Christophe + email: cderv@posit.co + orcid: https://orcid.org/0000-0003-4474-2498 + - family-names: McPherson + given-names: Jonathan + email: jonathan@posit.co + - family-names: Luraschi + given-names: Javier + - family-names: Ushey + given-names: Kevin + email: kevin@posit.co + - family-names: Atkins + given-names: Aron + email: aron@posit.co + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + - family-names: Cheng + given-names: Joe + email: joe@posit.co + - family-names: Chang + given-names: Winston + email: winston@posit.co + - family-names: Iannone + given-names: Richard + email: rich@posit.co + orcid: https://orcid.org/0000-0003-3925-190X + year: '2023' +- type: software + title: testthat + abstract: 'testthat: Unit Testing for R' + notes: Suggests + url: https://testthat.r-lib.org + repository: https://CRAN.R-project.org/package=testthat + authors: + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + year: '2023' + version: '>= 3.0.0'