From 23e83c7cf4e012f8c128e86c79c098015b6f3a46 Mon Sep 17 00:00:00 2001
From: Joshua Lambert <joshua.lambert@lshtm.ac.uk>
Date: Wed, 25 Sep 2024 16:55:53 +0100
Subject: [PATCH] update vignettes with new epiparameter constructor

---
 vignettes/epiparameter.Rmd    | 6 ++++--
 vignettes/extract_convert.Rmd | 6 ++++--
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/vignettes/epiparameter.Rmd b/vignettes/epiparameter.Rmd
index 5a4ced39b..d3f5d5e39 100644
--- a/vignettes/epiparameter.Rmd
+++ b/vignettes/epiparameter.Rmd
@@ -93,8 +93,10 @@ covid_incubation <- epiparameter(
   disease = "COVID-19",
   pathogen = "SARS-CoV-2",
   epi_dist = "incubation period",
-  prob_distribution = "gamma",
-  prob_distribution_params = c(shape = 2, scale = 1),
+  prob_distribution = create_prob_distribution(
+    prob_distribution = "gamma",
+    prob_distribution_params = c(shape = 2, scale = 1)
+  ),
   summary_stats = create_summary_stats(mean = 2),
   citation = create_citation(
     author = person(
diff --git a/vignettes/extract_convert.Rmd b/vignettes/extract_convert.Rmd
index cc5160b87..85e8e1089 100644
--- a/vignettes/extract_convert.Rmd
+++ b/vignettes/extract_convert.Rmd
@@ -82,8 +82,10 @@ ep <- epiparameter(
   disease = "<Disease name>",
   pathogen = "<Pathogen name>",
   epi_dist = "<Epidemilogical Distribution name>",
-  prob_distribution = "gamma",
-  prob_distribution_params = c(shape = 2.5, scale = 1.5)
+  prob_distribution = create_prob_distribution(
+    prob_distribution = "gamma",
+    prob_distribution_params = c(shape = 2.5, scale = 1.5)
+  )
 )
 convert_params_to_summary_stats(ep)
 ```