diff --git a/README.md b/README.md index 49d1f36..3fcbb60 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -[![MR.PARETO](https://img.shields.io/badge/MR.PARETO-red)](https://github.com/epigen/mr.pareto/) +[![MrBiomics](https://img.shields.io/badge/MrBiomics-red)](https://github.com/epigen/MrBiomics/) [![DOI](https://zenodo.org/badge/481635018.svg)](https://zenodo.org/badge/latestdoi/481635018) [![](https://tokei.rs/b1/github/epigen/mixscape_seurat?category=code)]() [![](https://tokei.rs/b1/github/epigen/mixscape_seurat?category=files)]() @@ -10,7 +10,7 @@ A [Snakemake 8](https://snakemake.readthedocs.io/en/stable/) workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with scRNA-seq read-out (scCRISPR-seq, CROP-seq, Perturb-seq) powered by the R package [Seurat's](https://satijalab.org/seurat/index.html) method [Mixscape](https://satijalab.org/seurat/articles/mixscape_vignette.html). > [!NOTE] -> This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details, instructions, and modules check out the project's repository. +> This workflow adheres to the module specifications of [MrBiomics](https://github.com/epigen/MrBiomics), an effort to augment research by modularizing (biomedical) data science. For more details, instructions, and modules check out the project's repository. > > ⭐️ **Star and share modules you find valuable** 📤 - help others discover them, and guide our future work! @@ -81,7 +81,7 @@ Detailed specifications can be found here [./config/README.md](./config/README.m - [Snakemake Workflow Catalog Entry](https://snakemake.github.io/snakemake-workflow-catalog?usage=epigen/mixscape_seurat) # 📚 Resources -- Recommended compatible [MR.PARETO](https://github.com/epigen/mr.pareto) modules for +- Recommended compatible [MrBiomics](https://github.com/epigen/MrBiomics) modules for - upstream processing: - [scRNA-seq Data Processing & Visualization](https://github.com/epigen/scrnaseq_processing_seurat) for processing (multimodal) single-cell transcriptome data.input. - downstream analyses: