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reference.fasta
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>reference_1
ATGCCCTTAAACTCTATAACCGGACCGCCGTAGGAGGGTTCGGAATCCCCTTTTACATTTGAAATGGTCAGGATCCGAACC
>reference_2
GGACACGGGCCTGATAATTTGAAGAGCAATATCATGGTAGTTATGAGTCAAATTACCTCAGTTCCAATGTATTTGTTCCGACAATATTAGTATAGCAGGATCATGAGGGGGACCTCGTGGATAACTCGTCCACACTCGTTGGCGAATCTTGCCATATTAGAATGCGATGGAGCATGCTATATTATATCCT
>reference_3
TGACTGAGAGGGAGTCAAAGAGTATTCGCGGGAGAAATACCGGTGCCCTAGTAATTTGGAATCGCGGCGGCATGCGCTGCA
>reference_4
GGTAGATCCGGAGTTCCACAATACAGTCCATCGTTTAAAATCAGGATCTGGTTAGGCCCCACGATGCATCATGATCGGGAGGTCTCTCCAGTTCCGTTATTAGGCCGACGCACGTCTCGCGGGAATGTTCCAGCTCAAGTACTATTAGAGATGGTGCGACATCTGTTTTGGGCCCGTGGGCAGGACTTAGATTCGCGCATTTCGGTCGCATCTCCGCCGGATTCAAGTCTAAATGCTCTCCGGGTCAGTGGCCACCTACACTCCACTGACAGCATCAAACCCTAAACTTATGTACAG
>reference_5
CTCGACTAGACAGTATATTAGAACCGACCAATGCATGTGGTAGCACGGG
>reference_6
TTGATTGGTACTCAATACAGATAGGGCGACAGAGGCGGTACCTAGGGACTAACATACTGAAACGGTTTCGGGGTCTGAAAGGGTGTGTTCTAGCTGTCCGCCTAAAAGCACGTGCCAGGGCGCAGTATAGATTCACGCGCCGCTCGTAGCTCTACTTATGCATCATTTAGAGTTCGCATGCTCTATCCCGCCGGAACCTGCTAGCTGGGCTCTAACTACCAAGGCATTTATCATTACTTTTTGGGTCCCTCGCGGGTACGCTAAGCTCTATCTCAACCGCTTGCGGGGTTAAACTCCTGCGAGATCTAATCTTGCGAAACCGTGCACCGAATAGAAAGAGCCGTCG
>reference_7
ACTCCATCTTAAAAATCGCTCTGAAGATATTCCTTTACTAGTCGGACCACAGAGTAGTTCTCTCGAGTGCTCGTCCGTTCGATCGCTCCCTCCCACGGGACCAACAGTAGCACTGTTGGCGTGTGCGAAAGCCAGTCTAGGAGGGTATAGCAGCTCACCGGGATTGCCGCTTACAACATCACATGAATTAAAGCCTGCTCTGGTGGTGGGATACGAGCGGGTATTGGAGGGCTGCAGCGTAATTTGGCTCCGACGGAATCAGCGCCCAGTGTGAATGTGTGTGCGCTAGGGAGTGAGCCATACTGAGCTGACTCACTTAGACTTTAATAC
>reference_8
TCAATAATTGATGTGGTGGTACTTGAAGTCGCTCCAACGACAGAACTCGTTGTGTCCTTGAGCACAACCTCTGTTCCATCCACATAAGGCTGTGGAAATAGACACGTTGCGTTTGTCATTCTGACGGGCTATGAACGTAGCGGTCCATGGGTCTGTCACGCCAGAATACAGGCCGCCCCCCATGGTTGTGCCCTTTACATCTCCTCTCACGCCATAGAGCGACTGTTGCTTACACGCGCCCGGTCTAGACACCCCTCAAATAGCCCTCGCGTGGATGTAAATGATGCTGTAAGATAAATCTGTACTGGGTTGTTAGTCA
>reference_9
GGATGTCGTGCCGCGCCCACAGCGATAGCACTGCTCATTGTCCCGCCATACTCACTGGGTATTCCATCCCCAACGAAATATAGATAACTTAGCAGTAAGTGATCAACTCTTCCCCGTAATAAGTAACAGGGATCGTAACATGACTGGTTCTCGAGTCTCAGGCGATTGAGTCTCATAACTTCTAAGGTCTACCGAGTCTTACAGAGTCGAACTACGATCGAAGTGTCGGAACGTAGTATCCAGAGTATGCAATGAAGAAATCGTGTTCCCTAGGGGAACTAGGAATATCACAAAACCGCGCTGGTAACTCGAGGGATGGTCGCTGACGGCTAAGAGTTTAGGG
>reference_10
CTGGACCTGTAGAGGTGCGTGAGTACGATGTGGTGCGCGCCTACATAAGGCTCTTCGATCCGTCAATCCCGGGTCTATTGTGTCATAGCAGGTAACGCAGGCCGACAGAGCCATAGCGCATTGAAACGTATCAGGGTACCTAGAGCCAAGACTCTCGTCCCTATTCTAGCCCTACTTACGGCAAGGTAATGATAAAACCAACGTTATGCCGTGCCTGATTAGAATTCCTGTTGTCGGGGCGATACTCTTAACTCCCAATGCGGATTAC
>reference_11
CAGTGCCGTAAACGCTATGAGACGACTCGCATTAATGCGGCTATCAAGCCGGCTGTCGTAGATATCTGGGCGCTGGGGCACGGTGTAGTTACGAAAAAATAAAGGACATGCCTGTGAGCTACGT
>reference_12
TAGTGACGCGGTTTGTTTTGCGGTCAATATTAAGGAGTTAGATGAGCGTATTAGACCGGGTGTGCTGCGAACAAGAGACGCGGCTTCTCCTTGGGCTGCTGTCACGGTTCACACCTCGCCGGGAGTAGGCCACCGTGAATGTCAGATGCGCTTCGCTCGCGTCTGGGCTAACGCGCTCTGCTTCATTCCGGATCTGTACACCTAATGTGTCTTTAGCTGCGTTCTGAAAGATCGACTAGTGAACGATTCTTGCCCAAGGCCCGATGGATTCCTAAACCGGTATTTGTGGCCGGAGAATACGAGTATATTCAATACAATTAACACCCGTGCTTTCGCGGCTTTAGGCGTTGCCTGT
>reference_13
GCAGAATCGGTGTGGCATTTGGAGTTAATTCTGGATAGAAACAATGAAATGGCGTGAGAGGTTGATCTGGGTCTCGACTTACTCAAGATGCTTGGGTGTAAGACACCAATTTGTAATACAGTTT
>reference_14
AGGGACCGCTTGGTGTTGAAGGGAAATCTGCCCCCGTAGTCTCGAGTACGAATTTCCGTCCTTATGGAAAAGCAAGCGGCGTAGTTACTCGCCTAAACAGCACGCAAACGCATATCGTGAAAGGATATCCTCAGTGATCTGTGGCTATATAAGAGGACTCAGCTTAATCGTTTTATGACGTGTAGATGAACCGTCATAATAGAACCTCCCGGACCGGCGCCCTATTCTGCCCCCCGATCCTAGTGGACGCATTGTGATCGTGTAGAACGGTTTCAAA
>reference_15
GTAAAGGAACGTAACATATGCCTGAAGTTTTCCTAAACTCTAGTCAATCTGCTTCCAGTACAAGGCTGTTACCACTGTATCAGCGTCTCATGGTTCTCTTGAATTCTAGCAGGCGCCTCCCCCTCATTTGCCAGCTCTAGTAACAAACCTAACGCTTCACCGGGTGTGGTTACCTATGTGGTTATAAAGGGGTGCTCTCCATAGTCGCGCCTAGTAATCGCCTTGAGACCCCAAACTAGCTCCGTATCCATACTGCGCGTAAGCCCTATCTCACATCT
>reference_16
AACCCATGCTTTACTCCGACGATTATATGGTTATACTACTACGCAACTCCTATTGCATAGACCTGGGGTATTAGGCATACTGCAGCGCCGCGCGCCATCCTAACTATCGATTGGCTGGGCTATGCGATTACCATAGTCGCCATTTCCTAATAACCTAGACGAGGCTCCTAAGCAGATTAACGAATCGTGCCTTATTGTTTATACCAAGGGTTTTCTTGGTACAGACACCAAGCCGATTGCTTGACCGTCGTGGGCCGGGTGATGTACGGGGATTTAACGGCGTGAAGAGGTCTGCATGCTTACAGGAT
>reference_17
GCCAGCTAATTGGTGCGTCGACATACTTGATAGGTGTAAGCAGGCGTGCTGATCCGCCACAGTCTATAAGGGTCGGAGAGCAACCTGTTTCGATAGGTAACAGCAAACCATCAGCTATCAAGCTTGTAGTCTCTGGCAATATTCGCAAAGGAGGCAAAAATGCCGCAGACGTTTCACAAAGAGGTTGATCTAACCGAACTTACGGAGTACTGGCGATTTTGTCTATGGTTCGTAATCGG
>reference_18
TATGCGGACTGAGTTAGCTTCACTGATCTGCCACCGCCAACATAGTTACAATCTGCTCAGGGGACTCGCAGTGCCATTTTTGTTCATTTATCTTCCGTGCGGCTCCGTCTTACCGGGGTCGGTGGCATAAAAGGTAGTTCCAAGTCGTCGCATGTTGATAACTGGGTGTGTTATGGGCAGTGAGTGGAGGCTGCGCAGAAGTATCCTCTCTATAGGCATGTGCGCATTCGTGCGTCGGTATAACCTCGAACGCAAAGTCAATCCCCTAGCAGTACAGCGAAAAGACGTACGGCCATCCAACGACGACTCGAGCATTCAAGTTCCTTGAGAGCATAAATTCTCCACCAGTTCTGCCATAA
>reference_19
CGGATGCTCACTCACACGTCTAAGCAGCTCGTATGCGGGGGGTACCATAACTGCGATCTTTTTCGGTAAAATAAAGTCAGTGAGTCTTGTGTCACATATGCATGATTGCACATGACGTCCCTACTCAATCGTCCGCGCGACATCATGCAAGCGGTACAATAGTCTATTATTCGACAGTATTGAGGAACCGCCCTGCCGTACCCGATGTACCGCTCTGATACGGAATCATCTACTGCAGGAACAAC
>reference_20
TTTAATGGATACATCATTCTGCCATGGGGGCATCTATGTTTTGCATCAGTGCAACACACGCTTTAATCTAGTTAGTACATCCGCAGTAGTTATTAGCGTGACCGTCAGCAGGTAATTGCTACTAGTGCAACGTTTGTTGTTCACTCGGATGAAGTTTGACAGCCAGCCAATCCTCAGCGCGGGCACGGGAAATAACAGCAGTGCAGTGGGACGTGATACCCTGCGAATCGTTAACACCTATACCCCGAACATGGTACGCAAACTTTAGGGCTTTTTCAGGCCACGCACCCGC
>reference_21
ATGTAAAGCCTACTGTTCAAGTGTAGATGGAGTTGCGGAGCGAATTACGGGT
>reference_22
GGTGTACCGAACCCCTTACGAAAAATCAACTGGGGTAGCCACAGAGGGGTAAATGAC
>reference_23
GGTAGATGTGCTCCTCGGACTGGCAGCAAGGGAGTGGGACCAAGACCTGGCCGGATTTTATTGCAAATGTGGGCTGACCCGCAATAAATGCTGCGAGTATAGTCCCTGCGATCTGAACTATGAGCTGT
>reference_24
CTCTACTCCGTCTAAAGCATGTACTGGCAGGGTCCGCACCATGTACGATGTCCCGAGCTAGTTGCAGGAGTCTCGCTAAAAGGAAATCGCTTGGGCGGACCAATATTTCAAACCGAATGATTTCCTACCGTTTCCTGGGTTAACGCGCTAAGAAAGATCGAACAGATGACGGGGGTATATTCCCAAGAGCAGGACTTCGTCTTCAAGTTGCGGTTTAGCTGGAGAAGGTCCGAGAAACGGTGATTACAGGAGGCGAATGGAGAGGTGTGTTCTGAAATCTGCCTTTCAGATAAGGAGCGCGTGCGATAAATAACTAGGGAGTGGCTCCGTTGACCTAAGTAGCAGTTGCTC
>reference_25
GAACGAAGTCAAAGGTGATATAATCGGAATATGGACTGCCGACCCAGCTCGCAACCAGGGAAACGTCTTATGGTCTCGTGCCCTGCACTCAAGCAAACATATTCCGTCACACCGGGGCCTTAACCTCGTAGGAGC
>reference_26
ATGCGTTTACATAACACTCTTCCACAAATCGTGATCTAACCCGGCTA
>reference_27
TATTAAGAGGGCTTTATTGGGTTATGACTATGTTGCAACATCCGTCTGGTTGCGCA
>reference_28
GTAATAGATGCCGATGACGGATTTCACCTGCACGCTTGCTGCATTAACCCTACTCCGAGAGTCTTATAGGACAAGCAGTTGAATAGCTGGAGTTCAAAAGCCGCCCATCAGGAAAGCGGGCCTGATTAACTTGCTAGATCGTCCCAATAACCCTCAAAGGTTCCAACACCGAGGTAATAAATATAGCGCCAAGTT
>reference_29
GCGGTCTTTGTAACTCCCATCCCTGGTCGCACGGGCTGCCTAAACATGATTATGCATATCGTCCAGTGAACTTGTGCACGGCCAACAACCCTTTAGCCCTCGAGGGATGAATGGGTATCCAAGTTGATGAATTAACCGTCATTGTGTAATTACCCGCGGTCCCGGCGAATAATCCCGTGTACAACCCCAACCGCGGTGGCTGGTACCCGCTTAGCATATTCAGAGTTCGCATAAAGAGCTGGATTAGACGAGAAAACGCGAGGAGCCCACGCGTCAACTTTCCAGTAACCCAATCTTAGCGGACAGAGTTACGGAGCGATACCTGGCTTCGGGAGTGA
>reference_30
CAGGCGAGCTCATTGATACTACTTCGGGGAGCCTTAGCTGATCAATGCACGTAGGTATAAACTCTCGAGCTAACCTACCGGGCAAATGGA
>reference_31
CCGGAACGCAAGGAAAAAATCCAGTAAGCTGGCTGGAGTCCAATAAAAACTCGCTAGTGACCGGTTGTCGCAGGTATAAGGGTGAGGTCGGTGCACTTGATCCTTGCGCTGACGATCTGTCTCGGGGTGACCTGCTCGACCCAGGTCTGTTTAGATCAAGTCCTGGACGCTAATCTGGGACAAGATGGAGTCCCCAC
>reference_32
TAATAATTAACCACGGGCCAAAGTTTTGTCCGGTGTCACGCTCGCGTTGCAAACGCCGCCCCGCCTAAGAAGTGTGGTCATGTGCGGTTCTTG
>reference_33
TTTGACGAAGGTCATTTCGCAAAATGTGCCAGCTTGTACTACATTAGATCGCATTGTTCACGTTAGCGACGACGGCAGAGCCGGTAAGAGTTTGACCTCCCTTAAGCCGCCAAGTTTTGCGGATTGCCGCGACTGGTTA
>reference_34
ACCACAGCTAGCCTAATAGTGGCCCATCCCGTGTTAGTAAAATACGTTTTGGGGTGTACTCCGACATAATATATCATGCCGAGAGCTGTTAACAATCGGGGGTAATGAAAAGTCCAGACAGCCGCGTCCGGCAGGTTCTGCTAAAGCGGTTGTGAACACAGGGGGCTGCTGAATTGCTGGAAAATGTCTTTGGCTCTCGACATCCGTGCAGCTCGTATCCGCTCCTTGATGCCCCACGAGAACTATACAGCGGAGCAACCAGGTGCTGTGAGGTGCAGGGGAGCCGTTAGGTTCATTGATCCTCAGATCTCGCTCCTGCGCGTCACGATGCTCCGGTAGCA
>reference_35
AGACGCGCAGGGCTCTTTGATTCAATGGGTTAGCCTACTATACCTAGAATTGGGTGGTCTCTTCCACAACGAGGATGGACGGTTGATGGAATCAGCAACCCAATTCCCATAGGCCACTTAAAGTAAGGAAGGGAGAACTGGAAGTGCCCTAACTACTAAAACGGG
>reference_36
ATCCCTGCTGGAACACTGTTATCCCGGGCTCCAAGTTCCATACAGAGTGCAGGCGTCCTCGCCTACGGCCCCGACCACATATGGCCTCTCTTTTAGGAAATGGACTAATGACGGCTCCTCCAAATCCGAGCCAAGTACTTGGCTGATCCTGACGGCTGCTGGTCTCTGCGGCGGGGCTTGTCTACTTTGGTTTAGAAGTAAGAGGCCTA
>reference_37
GAGTCGCGAGCAAGGTTTAACCCAGCGTTACAAAAATACCTTGGCGCGACGATCCCACGGGAGGGATGAACGTTTTTGCCTTGGGCATCAACTCAGATCGTGGGTGTAAAGCGCATTGAGATCGGGGAAGCGC
>reference_38
GGTCGGGCGTGTCAACTGGTATTCGACCAGCCCGAGAACTCTAGATCAAATCACTGTTGCTTAGACGTTACACCGTAGTCGTTCCTATCCGTCTCGCTAAAGATTCTAGCGAGAATCGATCTTCACTGCGTGAACGTTGATATTGTTGGACTATCGGAGTGGTAATA
>reference_39
GTCAGGGTGTTTTCTCCGTCTCTGAAACTGCGAAAGTCTCGGGACCTCATGTTCGGAAGCGCAGCTGCAAGGAAAAACCACAATCATCATAACGGGGTTACC
>reference_40
AGATTTGTTCGAAAGGTATAATTGTTTCTGCGGGTGGTGCACGTTCTGTCTCATGCTCCCTGAAAACCCACTCCGGGATAGAAACCCTTGCAGAGTAGACGATCGATAAAACAGCCGAATATATTACCTGCGCGTTAGAAATCTGGCAAGCTCATTTAATGAAA