From 42dba14446baf070a716e83a6b636b89d60b35fc Mon Sep 17 00:00:00 2001 From: aoulas <72922034+aoulas@users.noreply.github.com> Date: Mon, 3 Apr 2023 12:11:12 +0300 Subject: [PATCH 01/11] Update cy_resources.md --- pages/national_resources/cy_resources.md | 20 +++++++++++++++----- 1 file changed, 15 insertions(+), 5 deletions(-) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index 99442d7d5..5fb1c0cac 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -3,8 +3,8 @@ title: Cyprus search_exclude: true country_code: CY -contributors: [] -coordinators: [] +contributors: [Anastasis Oulas, Nicholas Killilis, Nestoras Kathanasis, George Spyrou, Vasilis Promponas] +coordinators: [Anastasis Oulas, Nicholas Killilis] # Link to other pages in the tool assembly section on the RDMkit by listing the page_id related_pages: @@ -53,12 +53,22 @@ national_resources: ## Introduction - +This page provides a general overview of national resources and initiatives on research data management (RDM) in Cyprus ## Funders +H2020-WIDESPREAD-01-2018-2019: Teaming Phase 2, for €15mi for 7 years. €15mi by the Government of Cyprus and another €8mi by the University of Cyprus. +The Research and Innovation Foundation (RIF) is the national authority in charge of supporting and promoting research, technological development and innovation in Cyprus. ## Regulations - +Cyprus National Bioethics Committee (document EEBK3). +All medical records and biological material are kept under secure conditions at a specially prepared +Biobank suite with absolute confidentiality and protection of sensitive data of personal character, +in compliance with the European General Data Protection Regulation (GDPR) ## Domain-specific infrastructures or resources - +Further development of the Biobank came with the success in funding by the European Commission in the framework of +program H2020-WIDESPREAD-01-2018-2019: Teaming Phase 2, for €15mi for 7 years. +The project is entitled: Biobanking and the Cyprus Human Genome Project. The project +is supplemented by another €15mi by the Government of Cyprus and another €8mi by the +University of Cyprus for a duration of 15 years, October 1, 2019 to September 30, 2034. +It aims to upgrade the current infrastructure into a Center of Excellence in Biobanking and Biomedical Research. From d4d28806be44700723cc87c5a61f4f1216049918 Mon Sep 17 00:00:00 2001 From: aoulas <72922034+aoulas@users.noreply.github.com> Date: Thu, 20 Apr 2023 10:54:31 +0300 Subject: [PATCH 02/11] Update cy_resources.md --- pages/national_resources/cy_resources.md | 1 - 1 file changed, 1 deletion(-) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index 5fb1c0cac..9c01debc5 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -4,7 +4,6 @@ title: Cyprus search_exclude: true country_code: CY contributors: [Anastasis Oulas, Nicholas Killilis, Nestoras Kathanasis, George Spyrou, Vasilis Promponas] -coordinators: [Anastasis Oulas, Nicholas Killilis] # Link to other pages in the tool assembly section on the RDMkit by listing the page_id related_pages: From 211475de0356f2e61c05106be9f3d3cd07522e5f Mon Sep 17 00:00:00 2001 From: aoulas <72922034+aoulas@users.noreply.github.com> Date: Thu, 25 May 2023 15:35:35 +0300 Subject: [PATCH 03/11] Update cy_resources.md --- pages/national_resources/cy_resources.md | 18 ++++++++++++------ 1 file changed, 12 insertions(+), 6 deletions(-) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index 9c01debc5..3154085a0 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -55,17 +55,23 @@ national_resources: This page provides a general overview of national resources and initiatives on research data management (RDM) in Cyprus ## Funders -H2020-WIDESPREAD-01-2018-2019: Teaming Phase 2, for €15mi for 7 years. €15mi by the Government of Cyprus and another €8mi by the University of Cyprus. -The Research and Innovation Foundation (RIF) is the national authority in charge of supporting and promoting research, technological development and innovation in Cyprus. +The [Research and Innovation Foundation (RIF)](https://www.research.org.cy/en/) is the national authority in charge of supporting and promoting research, technological development and innovation in Cyprus. ## Regulations -Cyprus National Bioethics Committee (document EEBK3). +The [Cypurs National Policy of the Republic of Cyprus for Open Science Practices](https://www.dmrid.gov.cy/dmrid/research.nsf/All/877E9BEBAF67EE6CC2258859003DF656/$file/%CE%95%CE%B8%CE%BD%CE%B9%CE%BA%CE%AE%20%CE%A0%CE%BF%CE%BB%CE%B9%CF%84%CE%B9%CE%BA%CE%AE%20%CE%91%CE%BD%CE%BF%CE%B9%CE%BA%CF%84%CE%AE%CF%82%20%CE%95%CF%80%CE%B9%CF%83%CF%84%CE%AE%CE%BC%CE%B7%CF%82.pdf?) was recently revised to inlcude research data managment and planning. + +The [Cyprus National Bioethics Committee](http://www.bioethics.gov.cy/moh/cnbc/cnbc.nsf/index_en/index_en?OpenDocument) (document EEBK3). All medical records and biological material are kept under secure conditions at a specially prepared Biobank suite with absolute confidentiality and protection of sensitive data of personal character, -in compliance with the European General Data Protection Regulation (GDPR) +in compliance with the [European General Data Protection Regulation (GDPR)](https://gdpr.eu/what-is-gdpr/). + +## Domain-specific infrastructures or resources + +The [Cyprus National Initiatives for Open Science in Europe – NI4OS Europe](https://ni4os.eu/overview/), aims to be a core contributor to the [European Open Science Cloud (EOSC)](https://www.eosc-portal.eu/) service portfolio, commit to EOSC governance and ensure inclusiveness on the European level for enabling global Open Science + +The [Cyprus Institite of Neurology and Genetics (CING)](https://www.cing.ac.cy/) acted as a hub for COVID-19 data during the pandemic. CING was involved in biosample collection and high-throughput data anlaysis of samples using Next Generation Sequencing (NGS). -## Domain-specific infrastructures or resources -Further development of the Biobank came with the success in funding by the European Commission in the framework of +The development of the [Cyprus Biobank](http://www.biobank.cy/) came with the success in funding by the European Commission in the framework of program H2020-WIDESPREAD-01-2018-2019: Teaming Phase 2, for €15mi for 7 years. The project is entitled: Biobanking and the Cyprus Human Genome Project. The project is supplemented by another €15mi by the Government of Cyprus and another €8mi by the From e4bddf58d674cee31afb57a9debd89b4f88278d0 Mon Sep 17 00:00:00 2001 From: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Date: Wed, 19 Jul 2023 14:33:37 +0200 Subject: [PATCH 04/11] Update cy_resources.md --- pages/national_resources/cy_resources.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index 3154085a0..a7a1a1340 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -1,7 +1,6 @@ --- title: Cyprus -search_exclude: true country_code: CY contributors: [Anastasis Oulas, Nicholas Killilis, Nestoras Kathanasis, George Spyrou, Vasilis Promponas] @@ -58,7 +57,7 @@ This page provides a general overview of national resources and initiatives on r The [Research and Innovation Foundation (RIF)](https://www.research.org.cy/en/) is the national authority in charge of supporting and promoting research, technological development and innovation in Cyprus. ## Regulations -The [Cypurs National Policy of the Republic of Cyprus for Open Science Practices](https://www.dmrid.gov.cy/dmrid/research.nsf/All/877E9BEBAF67EE6CC2258859003DF656/$file/%CE%95%CE%B8%CE%BD%CE%B9%CE%BA%CE%AE%20%CE%A0%CE%BF%CE%BB%CE%B9%CF%84%CE%B9%CE%BA%CE%AE%20%CE%91%CE%BD%CE%BF%CE%B9%CE%BA%CF%84%CE%AE%CF%82%20%CE%95%CF%80%CE%B9%CF%83%CF%84%CE%AE%CE%BC%CE%B7%CF%82.pdf?) was recently revised to inlcude research data managment and planning. +The [Cypurs National Policy of the Republic of Cyprus for Open Science Practices (PDF document)](https://www.dmrid.gov.cy/dmrid/research.nsf/All/877E9BEBAF67EE6CC2258859003DF656/$file/%CE%95%CE%B8%CE%BD%CE%B9%CE%BA%CE%AE%20%CE%A0%CE%BF%CE%BB%CE%B9%CF%84%CE%B9%CE%BA%CE%AE%20%CE%91%CE%BD%CE%BF%CE%B9%CE%BA%CF%84%CE%AE%CF%82%20%CE%95%CF%80%CE%B9%CF%83%CF%84%CE%AE%CE%BC%CE%B7%CF%82.pdf?) was recently revised to inlcude research data managment and planning. The [Cyprus National Bioethics Committee](http://www.bioethics.gov.cy/moh/cnbc/cnbc.nsf/index_en/index_en?OpenDocument) (document EEBK3). All medical records and biological material are kept under secure conditions at a specially prepared From daa2950888aeab62837cecd90ccca1e38679d621 Mon Sep 17 00:00:00 2001 From: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Date: Tue, 22 Aug 2023 13:34:15 +0200 Subject: [PATCH 05/11] Fix GitHub Action --- pages/national_resources/cy_resources.md | 35 ++++++++---------------- 1 file changed, 11 insertions(+), 24 deletions(-) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index a7a1a1340..82ecceb2a 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -6,42 +6,29 @@ contributors: [Anastasis Oulas, Nicholas Killilis, Nestoras Kathanasis, George S # Link to other pages in the tool assembly section on the RDMkit by listing the page_id related_pages: - tool_assembly: [] + tool_assembly: training: - - name: Training in TeSS - registry: TeSS - url: - - name: ELIXIR NODENAME community in Zenodo - registry: Zenodo - url: - - name: ELIXIR NODENAME YouTube - registry: YouTube - url: - - name: - registry: - url: # Refer to entries of the "main_tool_ and_resource_table" if institutions, organizations and projects from the country contribute to the development of international tools and resources. ref_to_main_resources: - - # List here tools and resources mainly relevant for the specific country national_resources: - - name: + - name: description: - how_to_access: - instance_of: + how_to_access: + instance_of: related_pages: - tool_assembly: [] - your_domain: [] - your_role: [] - your_tasks: [] + tool_assembly: + your_domain: + your_role: + your_tasks: url: registry: - biotools: - fairsharing: - tess: + biotools: + fairsharing: > + tess: --- From f1969a6e507ef787712792c70e92ff82a9fe3a31 Mon Sep 17 00:00:00 2001 From: bedroesb Date: Tue, 22 Aug 2023 13:42:23 +0200 Subject: [PATCH 06/11] typos --- pages/national_resources/cy_resources.md | 20 +++----------------- 1 file changed, 3 insertions(+), 17 deletions(-) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index 9e8ff8d02..66a87d20b 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -6,7 +6,6 @@ contributors: [Anastasis Oulas, Nicholas Killilis, Nestoras Kathanasis, George S # Link to other pages in the tool assembly section on the RDMkit by listing the page_id related_pages: - tool_assembly: training: @@ -15,20 +14,7 @@ ref_to_main_resources: # List here tools and resources mainly relevant for the specific country national_resources: - - name: - description: - how_to_access: - instance_of: - related_pages: - tool_assembly: - your_domain: - your_role: - your_tasks: - url: - registry: - biotools: - fairsharing: - tess: + --- @@ -44,7 +30,7 @@ This page provides a general overview of national resources and initiatives on r The [Research and Innovation Foundation (RIF)](https://www.research.org.cy/en/) is the national authority in charge of supporting and promoting research, technological development and innovation in Cyprus. ## Regulations -The [Cypurs National Policy of the Republic of Cyprus for Open Science Practices (PDF document)](https://www.dmrid.gov.cy/dmrid/research.nsf/All/877E9BEBAF67EE6CC2258859003DF656/$file/%CE%95%CE%B8%CE%BD%CE%B9%CE%BA%CE%AE%20%CE%A0%CE%BF%CE%BB%CE%B9%CF%84%CE%B9%CE%BA%CE%AE%20%CE%91%CE%BD%CE%BF%CE%B9%CE%BA%CF%84%CE%AE%CF%82%20%CE%95%CF%80%CE%B9%CF%83%CF%84%CE%AE%CE%BC%CE%B7%CF%82.pdf?) was recently revised to inlcude research data managment and planning. +The [Cypurs National Policy of the Republic of Cyprus for Open Science Practices (PDF document)](https://www.dmrid.gov.cy/dmrid/research.nsf/All/877E9BEBAF67EE6CC2258859003DF656/$file/%CE%95%CE%B8%CE%BD%CE%B9%CE%BA%CE%AE%20%CE%A0%CE%BF%CE%BB%CE%B9%CF%84%CE%B9%CE%BA%CE%AE%20%CE%91%CE%BD%CE%BF%CE%B9%CE%BA%CF%84%CE%AE%CF%82%20%CE%95%CF%80%CE%B9%CF%83%CF%84%CE%AE%CE%BC%CE%B7%CF%82.pdf?) was recently revised to include research data management and planning. The [Cyprus National Bioethics Committee](http://www.bioethics.gov.cy/moh/cnbc/cnbc.nsf/index_en/index_en?OpenDocument) (document EEBK3). All medical records and biological material are kept under secure conditions at a specially prepared @@ -55,7 +41,7 @@ in compliance with the [European General Data Protection Regulation (GDPR)](http The [Cyprus National Initiatives for Open Science in Europe – NI4OS Europe](https://ni4os.eu/overview/), aims to be a core contributor to the [European Open Science Cloud (EOSC)](https://www.eosc-portal.eu/) service portfolio, commit to EOSC governance and ensure inclusiveness on the European level for enabling global Open Science -The [Cyprus Institite of Neurology and Genetics (CING)](https://www.cing.ac.cy/) acted as a hub for COVID-19 data during the pandemic. CING was involved in biosample collection and high-throughput data anlaysis of samples using Next Generation Sequencing (NGS). +The [Cyprus Institite of Neurology and Genetics (CING)](https://www.cing.ac.cy/) acted as a hub for COVID-19 data during the pandemic. CING was involved in biosample collection and high-throughput data analysis of samples using Next Generation Sequencing (NGS). The development of the [Cyprus Biobank](http://www.biobank.cy/) came with the success in funding by the European Commission in the framework of program H2020-WIDESPREAD-01-2018-2019: Teaming Phase 2, for €15mi for 7 years. From 4d2821ebf9078398d2d321d969f79ed9093b355e Mon Sep 17 00:00:00 2001 From: bedroesb Date: Tue, 22 Aug 2023 13:45:52 +0200 Subject: [PATCH 07/11] add coordinator --- pages/national_resources/cy_resources.md | 1 + 1 file changed, 1 insertion(+) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index 66a87d20b..cb699434c 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -3,6 +3,7 @@ title: Cyprus country_code: CY contributors: [Anastasis Oulas, Nicholas Killilis, Nestoras Kathanasis, George Spyrou, Vasilis Promponas] +coordinators: [Anastasis Oulas] # Link to other pages in the tool assembly section on the RDMkit by listing the page_id related_pages: From 2fd7f91bc5ae6f93e9184f6094c6bdc5ea8bf463 Mon Sep 17 00:00:00 2001 From: bedroesb Date: Tue, 22 Aug 2023 13:51:01 +0200 Subject: [PATCH 08/11] add to side bar + news article --- _data/news.yml | 4 ++++ _data/sidebars/data_management.yml | 2 ++ 2 files changed, 6 insertions(+) diff --git a/_data/news.yml b/_data/news.yml index de2ede1ee..becbcf54e 100644 --- a/_data/news.yml +++ b/_data/news.yml @@ -134,3 +134,7 @@ date: 2023-08-18 linked_pr: 1249 description: "All items in the 'Relevant tools and resources' tables are now mentioned in the text. This means you have context of when it is appropriate to use each one. Tools and resources in the text will also feature a popup providing extra information about them. These changes means there is a new way to contribute tools: see our [new guidelines](tool_resource_update)!" +- name: "New page: National resources Cyprus" + date: 2023-08-22 + linked_pr: 1226 + description: This page gives an insight in RDM on national level in Cyprus. [Discover the page here](cy_resources) diff --git a/_data/sidebars/data_management.yml b/_data/sidebars/data_management.yml index 21f06ff81..765a777a1 100644 --- a/_data/sidebars/data_management.yml +++ b/_data/sidebars/data_management.yml @@ -136,6 +136,8 @@ subitems: subitems: - title: Belgium url: /be_resources + - title: Cyprus + url: /cy_resources - title: Czech Republic url: /cz_resources - title: Germany From cbc5964439994b7b2d4a72537e21a943e178616f Mon Sep 17 00:00:00 2001 From: aoulas <72922034+aoulas@users.noreply.github.com> Date: Tue, 22 Aug 2023 15:27:11 +0300 Subject: [PATCH 09/11] Update CONTRIBUTORS.yaml --- _data/CONTRIBUTORS.yaml | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/_data/CONTRIBUTORS.yaml b/_data/CONTRIBUTORS.yaml index a3c32d93d..07bd7329c 100644 --- a/_data/CONTRIBUTORS.yaml +++ b/_data/CONTRIBUTORS.yaml @@ -371,6 +371,23 @@ Anastasis Oulas: email: anastasioso@cing.ac.cy git: aoulas affiliation: Cyprus Institute of Neurology & Genetics (CING) +Nestoras Kathanasis: + orcid: 0000-0003-4119-0851 + email: nestorask@cing.ac.cy + git: NestorasK + affiliation: Cyprus Institute of Neurology & Genetics (CING) +George Spyrou: + orcid: 0000-0002-2470-3363 + email: georges@cing.ac.cy + affiliation: Cyprus Institute of Neurology & Genetics (CING) +Vasilis Promponas: + orcid: 0000-0003-3352-4831 + email: vprobon@ucy.ac.cy + affiliation: University of Cyprus (UCY) +Nicolas Kylilis: + orcid: 0000-0001-7202-4827 + email: kylilis.nicolas@ucy.ac.cy + affiliation: University of Cyprus (UCY) Heleri Inno: git: heleriinno email: heleri.inno@ut.ee From ef9dbd4767b6d4d3f62ae201cdc935d0cd44cd00 Mon Sep 17 00:00:00 2001 From: aoulas <72922034+aoulas@users.noreply.github.com> Date: Tue, 22 Aug 2023 15:33:21 +0300 Subject: [PATCH 10/11] Update CONTRIBUTORS.yaml --- _data/CONTRIBUTORS.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_data/CONTRIBUTORS.yaml b/_data/CONTRIBUTORS.yaml index 07bd7329c..3c1cd1c41 100644 --- a/_data/CONTRIBUTORS.yaml +++ b/_data/CONTRIBUTORS.yaml @@ -371,7 +371,7 @@ Anastasis Oulas: email: anastasioso@cing.ac.cy git: aoulas affiliation: Cyprus Institute of Neurology & Genetics (CING) -Nestoras Kathanasis: +Nestoras Karathanasis: orcid: 0000-0003-4119-0851 email: nestorask@cing.ac.cy git: NestorasK From e981ecfbfabd6292abf5d83c7bf78ae56c547711 Mon Sep 17 00:00:00 2001 From: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Date: Tue, 22 Aug 2023 14:47:02 +0200 Subject: [PATCH 11/11] update contributors --- pages/national_resources/cy_resources.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pages/national_resources/cy_resources.md b/pages/national_resources/cy_resources.md index cb699434c..561b197ba 100644 --- a/pages/national_resources/cy_resources.md +++ b/pages/national_resources/cy_resources.md @@ -2,7 +2,7 @@ title: Cyprus country_code: CY -contributors: [Anastasis Oulas, Nicholas Killilis, Nestoras Kathanasis, George Spyrou, Vasilis Promponas] +contributors: [Anastasis Oulas, Nicolas Kylilis, Nestoras Karathanasis, George Spyrou, Vasilis Promponas] coordinators: [Anastasis Oulas] # Link to other pages in the tool assembly section on the RDMkit by listing the page_id