Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

BiojavaManager #39

Open
5 of 37 tasks
egonw opened this issue Dec 26, 2020 · 0 comments
Open
5 of 37 tasks

BiojavaManager #39

egonw opened this issue Dec 26, 2020 · 0 comments

Comments

@egonw
Copy link
Owner

egonw commented Dec 26, 2020 •
edited
Loading

  • public List DNAsFromString(String dnaString) {
  • public List RNAsFromString(String rnaString) {
  • public List proteinsFromString(String proteinString) {
  • public IDNA DNAfromPlainSequence(String dnaString) {
  • public IRNA RNAfromPlainSequence(String rnaString) {
  • public IProtein proteinFromPlainSequence(String proteinString) {
  • public IDNA DNAfromPlainSequence(String dnaString, String name) {
  • public IRNA RNAfromPlainSequence(String rnaString, String name) {
  • public IProtein proteinFromPlainSequence(String proteinString,
  • public IProtein DNAtoProtein(IDNA dna) {
  • public IProtein DNAtoProtein(IDNA dna, String name) {
  • public List DNAtoProtein(List dnas) {
  • public IRNA DNAtoRNA(IDNA dna) {
  • public IRNA DNAtoRNA(IDNA dna, String name) {
  • public List DNAtoRNA(List dnas) {
  • public IProtein RNAtoProtein(IRNA rna) {
  • public IProtein RNAtoProtein(IRNA rna, String name) {
  • public List RNAtoProtein(List rnas) {
  • public IRNA transcriptionOf(IDNA dna) {
  • public IRNA transcriptionOf(IDNA dna, String name) {
  • public List transcriptionOf(List dnas) {
  • public IProtein translationOf(IRNA rna) {
  • public IProtein translationOf(IRNA rna, String name) {
  • public List translationOf(List rnas) {
  • public String getManagerName() {
  • public List DNAsFromFile(IFile file)
  • public List RNAsFromFile(IFile file)
  • public List proteinsFromFile(IFile file)
  • public List sequencesFromFile( IFile file )
  • public void sequencesToFASTAfile(final List<? extends ISequence> sequences,
  • public String sequencesToFASTAString(
  • public RecordableList createSequenceList()
  • public String proteinsToFASTAString(final List proteins){
  • public String dnaToFASTAString(final List dnas){
  • public void proteinsToFASTAfile(List proteins, IFile file) {
  • public List features(ISequence sequence) {
  • public List sequencesFromString(String s) {
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
Overview Bioclipse 2 API Coverage
Status: Partly supported
Milestone
No milestone
Development

No branches or pull requests
1 participant
@egonw