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I wonder whether anyone can help me with the error I'm getting with InterProScan when I ran the test command as follows.
$ ./interproscan.sh -i test_all_appl.fasta -f tsv 08/07/2022 17:44:27:058 Welcome to InterProScan-5.56-89.0 08/07/2022 17:44:27:059 Running InterProScan v5 in STANDALONE mode... on Linux [1.393s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 4k, detached. [1.423s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 4k, detached. [1.432s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 4k, detached. [1.472s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [1.473s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [1.473s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [......] [6.388s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.388s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.391s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.398s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.439s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.444s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.444s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.467s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.467s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.467s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.468s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.468s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.468s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.468s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.492s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.524s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. [6.616s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached. org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.apache.activemq.xbean.XBeanBrokerService#0' defined in class path resource [spring/jms/master/standalone-master-context.xml]: Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: unable to create native thread: possibly out of memory or process/resource limits reached at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:594) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:516) at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:324) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:322) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202) at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:897) at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:879) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:551) at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:144) at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:95) at uk.ac.ebi.interpro.scan.jms.main.Run.main(Run.java:233) Caused by: java.lang.OutOfMemoryError: unable to create native thread: possibly out of memory or process/resource limits reached at java.base/java.lang.Thread.start0(Native Method) at java.base/java.lang.Thread.start(Thread.java:803) at java.base/java.util.Timer.<init>(Timer.java:177) at org.apache.activemq.thread.Scheduler.doStart(Scheduler.java:72) at org.apache.activemq.util.ServiceSupport.start(ServiceSupport.java:55) at org.apache.activemq.broker.BrokerService.getScheduler(BrokerService.java:2862) at org.apache.activemq.broker.BrokerService.createRegionBroker(BrokerService.java:2406) at org.apache.activemq.broker.BrokerService.createRegionBroker(BrokerService.java:2391) at org.apache.activemq.broker.BrokerService.createBroker(BrokerService.java:2348) at org.apache.activemq.broker.BrokerService.getBroker(BrokerService.java:1045) at org.apache.activemq.broker.BrokerService.getAdminConnectionContext(BrokerService.java:2619) at org.apache.activemq.broker.BrokerService.startVirtualConsumerDestinations(BrokerService.java:2780) at org.apache.activemq.broker.BrokerService.startDestinations(BrokerService.java:2610) at org.apache.activemq.broker.BrokerService.doStartBroker(BrokerService.java:739) at org.apache.activemq.broker.BrokerService.startBroker(BrokerService.java:733) at org.apache.activemq.broker.BrokerService.start(BrokerService.java:636) at org.apache.activemq.xbean.XBeanBrokerService.afterPropertiesSet(XBeanBrokerService.java:73) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1925) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1867) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1795) ... 12 more [6.645s][warning][os,thread] Failed to start thread - pthread_create failed (EAGAIN) for attributes: stacksize: 1024k, guardsize: 0k, detached.
And the ulimit information is as follows.
$ ulimit -a -t: cpu time (seconds) unlimited -f: file size (blocks) unlimited -d: data seg size (kbytes) unlimited -s: stack size (kbytes) 8192 -c: core file size (blocks) 0 -m: resident set size (kbytes) unlimited -u: processes 36 -n: file descriptors 4096 -l: locked-in-memory size (kbytes) 64 -v: address space (kbytes) unlimited -x: file locks unlimited -i: pending signals 4124768 -q: bytes in POSIX msg queues 819200 -e: max nice 0 -r: max rt priority 0 -N 15: unlimited
The version of interproscan is
$ ./interproscan.sh -version InterProScan version 5.56-89.0 InterProScan 64-Bit build (requires Java 11)
The text was updated successfully, but these errors were encountered:
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I wonder whether anyone can help me with the error I'm getting with InterProScan when I ran the test command as follows.
And the ulimit information is as follows.
The version of interproscan is
The text was updated successfully, but these errors were encountered: