pyproject.toml

[tool.poetry]
name = "liminal-orm"
version = "1.1.4"
description = "An ORM and toolkit that builds on top of Benchling's platform to keep your schemas and downstream code dependencies in sync."
authors = ["DynoTx Open Source <opensource@dynotx.com>"]
readme = "README.md"
homepage = "https://github.com/dynotx/liminal-orm"
repository = "https://github.com/dynotx/liminal-orm"
documentation = "https://dynotx.github.io/liminal-orm/"
packages = [{include = "liminal"}]

[tool.poetry.urls]
"Bug Tracker" = "https://github.com/dynotx/liminal-orm/issues"

[tool.poetry.dependencies]
python = ">=3.9,<4"
benchling-sdk = ">=1.8.0"
bs4 = "^0.0.2"
numpy = "^1.23.5"
pandas = "^1.5.3"
pydantic = ">=2,<=2.7" # TODO: We need to assess this upgrade
requests = "^2.32.3"
rich = "^13.9.2"
sqlalchemy = "<2" # TODO: We need to assess this upgrade
tenacity = ">=8,<10"
typer = "^0.12.5"
lxml = "^5.3.0"
psycopg2-binary = "^2.9.10"

[tool.poetry.group.dev.dependencies]
ipykernel = "^6.29.5"
mkdocs-material = "^9.5.41"
mypy = "^1.1.1"
pre-commit = "^4.0.1"
pytest = "^8.3.3"
ruff = "^0.6.9"
sqlalchemy = "1.4.49"
types-beautifulsoup4 = "^4.12.0.20240907"
types-requests = "^2.32.0.20240914"


[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.poetry.scripts]
liminal = "liminal.cli.cli:app"

[tool.mypy]
check_untyped_defs = true
disallow_untyped_defs = true
explicit_package_bases = true
mypy_path = "$MYPY_CONFIG_FILE_DIR/"
namespace_packages = true
no_implicit_optional = true
strict_optional = true
packages = "liminal"
plugins = ["pydantic.mypy", "numpy.typing.mypy_plugin"]
show_error_codes = true
warn_unused_ignores = true
disable_error_code=["union-attr"]

[[tool.mypy.overrides]]
module = ["sqlalchemy.*"]
ignore_missing_imports = true