diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index c153adf5..839129d7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -11,7 +11,7 @@ on: permissions: contents: read - + jobs: lint: runs-on: ubuntu-latest @@ -33,13 +33,13 @@ jobs: flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics - + test: runs-on: ubuntu-latest strategy: fail-fast: false matrix: - python-version: ["3.8", "3.9", "3.10"] + python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] steps: - uses: actions/checkout@v3 - uses: codecov/codecov-action@v3 @@ -51,9 +51,8 @@ jobs: run: | python -m pip install --upgrade pip pip install poetry - poetry export --with dev > requirements.txt - pip install -r requirements.txt + poetry install --with dev - name: Test with pytest run: | - pytest --cov=pygam - codecov + poetry run pytest --cov=pygam + poetry run codecov diff --git a/doc/source/index.rst b/doc/source/index.rst index 751a798f..735dd641 100644 --- a/doc/source/index.rst +++ b/doc/source/index.rst @@ -28,11 +28,11 @@ Or via ``conda-forge``, however this is typically less up-to-date: :: conda install -c conda-forge pyGAM -You can install the bleeding edge from github using ``flit``. +You can install the bleeding edge from github using ``poetry``. First clone the repo, ``cd`` into the main directory and do: :: - pip install flit - flit install + pip install poetry + poetry install Optional diff --git a/doc/source/notebooks/quick_start.ipynb b/doc/source/notebooks/quick_start.ipynb index 8bd0af4f..aff99ddb 100644 --- a/doc/source/notebooks/quick_start.ipynb +++ b/doc/source/notebooks/quick_start.ipynb @@ -27,11 +27,11 @@ " \n", "\n", "#### Bleeding edge\n", - "You can install the bleeding edge from github using `flit`.\n", + "You can install the bleeding edge from github using `poetry`.\n", "First clone the repo, ``cd`` into the main directory and do:\n", "\n", - " pip install flit\n", - " flit install" + " pip install poetry\n", + " poetry install" ] }, { @@ -529,4 +529,4 @@ }, "nbformat": 4, "nbformat_minor": 2 -} \ No newline at end of file +} diff --git a/poetry.lock b/poetry.lock index 36cbadea..5f8f9338 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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import absolute_import +from importlib.metadata import version, PackageNotFoundError from pygam.pygam import GAM from pygam.pygam import LinearGAM @@ -33,4 +32,10 @@ 'intercept', ] -__version__ = '0.8.0' + +__version__ = "0.0.0" # placeholder for dynamic versioning +try: + __version__ = version("pygam") +except PackageNotFoundError: + # package is not installed + pass diff --git a/pygam/callbacks.py b/pygam/callbacks.py index 7890f040..fac07145 100644 --- a/pygam/callbacks.py +++ b/pygam/callbacks.py @@ -1,8 +1,6 @@ """ CallBacks """ - -from __future__ import absolute_import from functools import wraps import numpy as np diff --git a/pygam/core.py b/pygam/core.py index dd7fc277..49b9a0bc 100644 --- a/pygam/core.py +++ b/pygam/core.py @@ -1,9 +1,6 @@ """ Core classes """ - -from __future__ import absolute_import - import numpy as np from pygam.utils import round_to_n_decimal_places, flatten diff --git a/pygam/distributions.py b/pygam/distributions.py index 18e95446..e68c2416 100644 --- a/pygam/distributions.py +++ b/pygam/distributions.py @@ -1,8 +1,6 @@ """ Distributions """ - -from __future__ import division, absolute_import from functools import wraps from abc import ABCMeta from abc import abstractmethod diff --git a/pygam/links.py b/pygam/links.py index 6f429939..df73d34d 100644 --- a/pygam/links.py +++ b/pygam/links.py @@ -1,8 +1,6 @@ """ Link functions """ -from __future__ import division, absolute_import - import numpy as np from pygam.core import Core diff --git a/pygam/pygam.py b/pygam/pygam.py index 16e5c24b..bebcef13 100644 --- a/pygam/pygam.py +++ b/pygam/pygam.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- - -from __future__ import division, absolute_import from collections import defaultdict from collections import OrderedDict from copy import deepcopy diff --git a/pygam/terms.py b/pygam/terms.py index 8d692964..c033e726 100644 --- a/pygam/terms.py +++ b/pygam/terms.py @@ -1,7 +1,6 @@ """ Link functions """ -from __future__ import division, absolute_import from abc import ABCMeta from abc import abstractmethod, abstractproperty from collections import defaultdict diff --git a/pygam/tests/test_terms.py b/pygam/tests/test_terms.py index 46d0f172..72c9ce0b 100644 --- a/pygam/tests/test_terms.py +++ b/pygam/tests/test_terms.py @@ -1,5 +1,4 @@ # -*- coding: utf-8 -*- - from copy import deepcopy import numpy as np diff --git a/pygam/tests/test_utils.py b/pygam/tests/test_utils.py index 2a06e86c..fcf1096b 100644 --- a/pygam/tests/test_utils.py +++ b/pygam/tests/test_utils.py @@ -1,13 +1,7 @@ # -*- coding: utf-8 -*- from copy import deepcopy - -try: - # py >= 3.3 - from unittest.mock import patch -except ImportError: - # py < 3.3 - from mock import patch +from mock import patch import numpy as np import pytest diff --git a/pygam/utils.py b/pygam/utils.py index 994de394..bc65ad5c 100644 --- a/pygam/utils.py +++ b/pygam/utils.py @@ -1,8 +1,6 @@ """ Pygam utilities """ - -from __future__ import division from copy import deepcopy import numbers import sys diff --git a/pyproject.toml b/pyproject.toml index 22066e11..2fe8e8a0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,18 +1,25 @@ [tool.poetry] name = "pygam" -version = "0.9.0" +version = "0.0.0" # placeholder for dynamic versioning description = "" authors = ["Daniel Servén Marín", "Charlie Brummitt"] license = "Apache-2.0" readme = "README.md" [tool.poetry.dependencies] -python = ">=3.8.1, <3.12" -numpy = "^1.24.2" -scipy = "^1.10.1" +python = ">=3.8.1, <3.13" +numpy = [ + { version = ">=1.24.2,<1.25", python = "<3.9,>=3.8" }, + { version = ">=1.25", python = "<3.13,>=3.9" }, +] progressbar2 = "^4.2.0" +scipy = [ + { version = ">=1.10.1,<1.11", python = "<3.9,>=3.8" }, + { version = ">=1.11.1,<1.12", python = "<3.13,>=3.9" } +] [tool.poetry.group.dev.dependencies] +pandas = ">=1.6" pytest = "^7.2.2" flake8 = "^6.0.0" codecov = "^2.1.12" @@ -22,7 +29,6 @@ nbsphinx = "^0.9.0" sphinx-rtd-theme = "^1.2.0" sphinxcontrib-napoleon = "^0.7" ipython = "^8.11.0" -pandas = 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