vasp_makeTDPT_Cn.sh

#!/bin/bash

natoms=64

if [ $4 ] ; then
	natoms=$4
fi 
echo "Using $natoms atoms..."

mkdir SHIFT

for i in $(seq $1 $2 $3) ; do 
	head -n7 XDATCAR > SHIFT/conf$i.POSCAR 
	grep "Direct configuration=[' ']*$i$" XDATCAR -A $natoms >> SHIFT/conf$i.POSCAR
done

cp ~/bin/vasp_tools/Cn/POTCAR ~/bin/vasp_tools/Cn/INCAR ~/bin/vasp_tools/Cn/KPOINTS SHIFT/

cd SHIFT

for i in $(seq $1 $2 $3) ; do 
	mkdir SR600_CONF${i}_SP 
	cp INCAR POTCAR KPOINTS SR600_CONF${i}_SP 
	cp conf${i}.POSCAR SR600_CONF${i}_SP/POSCAR 
done

for i in SR600_CONF* ; do 
	j=$(echo $i | sed s/SR600/SR400/) 
	cp -r $i $j 
	sed -i /ENCUT/s/600/400/ $j/INCAR
	sed -i /EDIFF/s/06/04/ $j/INCAR
	sed -i /PREC/s/accurate/normal/ $j/INCAR
done 

for i in SR600_CONF* ; do 
	j=$(echo $i | sed s/SR600/K3SR600/)
	cp -r $i $j 
	sed -i "s/2  2  2/3  3  3/" $j/KPOINTS 
done 

#for i in SR600_CONF* ; do
#        j=$(echo $i | sed s/SR600/K4SR600/)
#        cp -r $i $j
#        sed -i "s/2  2  2/4  4  4/" $j/KPOINTS
#done

for i in SR600_CONF* ; do
        j=$(echo $i | sed s/SR600/SO600/)
        cp -r $i $j
        sed -i /LSORBIT/s/FALSE/TRUE/ $j/INCAR
done

for i in SR*CONF* ; do
        cd $i
        subvSHMAUI -p160 -m1 -t4 -n2 -q nesi_research
        cd -
done

for i in K*SR* ; do
        cd $i
        subvSHMAUI -p160 -m2 -t8 -n2 -q nesi_research
        cd -
done

for i in SO*CONF* ; do
        cd $i
        subvSHSOMAUI -p160 -m2 -t8 -n2 -q nesi_research
        cd -
done