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NEWS
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Changes in version 1.1.0:
SIGNIFICANT USER-VISIBLE CHANGES
o Incorporate ShinyGPA developed by Emma Kortemeier as a part of the R package.
o Add fitAll() to fit GPA models for possible pairs of phenotypes.
o Add shinyGPA() to open the shiny app for the interactive pleiotropy visualization.
o Fix a bug in GPA(), which resulted in NaN when verbose == 0.
Changes in version 0.9.3:
SIGNIFICANT USER-VISIBLE CHANGES
o Incorporate R package vignette.
o assoc(), fdr(): allows association mapping & local FDR for specific association status.
o aTest(), pTest(): message() was replaced with cat().
Changes in version 0.9.2:
SIGNIFICANT USER-VISIBLE CHANGES
o Add se() to provide parameter estimates and their standard errors.
Changes in version 0.9.1:
SIGNIFICANT USER-VISIBLE CHANGES
o Add fdr() to provide local FDR that a SNP is not associated with each phenotype.
o Add assoc() for association mapping.
o The function aTest() and methods show() and cov() for class 'GPA' now provide estimates and standard error for the ratio of q in each association class over the baseline.
o In GPA(), 'initBetaMean' argument is replaced with 'initBetaAlpha'.
o Generally improve robustness of functions by checking input for arguments.
Changes in version 0.9.0:
o The first version of GPA R package.