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Running Parliament2 on multiple WGS sammples #89

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nitha26 opened this issue Aug 18, 2020 · 0 comments
Open

Running Parliament2 on multiple WGS sammples #89

nitha26 opened this issue Aug 18, 2020 · 0 comments

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@nitha26
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nitha26 commented Aug 18, 2020 •
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Hi Authors,

I had installed Parliament2 docker version in centos7 (centos-release-7-8.2003.0.el7.centos.x86_64) local machine to GermlineSV calling.

Could you give me an answer to bellow questions:

  1. How many inputs can be given for a single run. what is the maximum input can be used for running Parliament in a single run?
  2. If suppose I have to identify structural variation for >100 samples in a single stretch, how should I run. can I mention the input file as *.bam? How to run multiple samples in one go ?

please guide me on how to run multiple samples in Parliament2.

Thanks.
@nitha26 nitha26 changed the title parliament2.py: error: unrecognized arguments / subprocess.CalledProcessError: Command '['bash', 'parliament2.sh Running Parliament2 on multiple WGS sammples Oct 30, 2020
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