author-partial.tex

%%%%% Authors, affiliations and author notes stuff %%%%%

% Macros for creating and referencing stored reference
\makeatletter
\def\MyNewLabel#1#2#3{\expandafter\gdef\csname #1@#2\endcsname{#3}}

\def\MyRef#1#2{\@ifundefined{#1@#2}{???}{\csname #1@#2\endcsname}}

\newcommand*\ifcounter[1]{%
  \ifcsname c@#1\endcsname
    \expandafter\@firstoftwo
  \else
    \expandafter\@secondoftwo
  \fi
}
\makeatother

% Create labels for Addresses if the are given by code
$for(address)$
\MyNewLabel{ADDRTXT}{$address.code$}{$address.address$}
$endfor$

% Create labels for Footnotes if they are given by code
$for(footnote)$
\MyNewLabel{ANOTETXT}{$footnote.code$}{$footnote.text$}
$endfor$

%%% Special footnotes for addresses and author footnotes
\usepackage{bigfoot}
\DeclareNewFootnote{Addr}[arabic] % Only used for NOT authblk
\DeclareNewFootnote{ANote}[fnsymbol]

%%% Address and author notes as a function of format %%%
$if(authblk)$ % Use authblk for affiliations %%%%%%%%%%%
\usepackage{authblk}

% Always separate by commas
\renewcommand\Authsep{, }
\renewcommand\Authand{, }
\renewcommand\Authands{, }

% Counter for addresses and footnotes
\newcounter{addrcnt}

% thanks definition that doesn't produce superscript marks
\makeatletter
\newcommand*\createaddrlblbycode[1]{%
  \ifcounter{ADDRLBL@#1}
    {}
    {\refstepcounter{addrcnt}\newcounter{ADDRLBL@#1}\setcounter{ADDRLBL@#1}{\value{addrcnt}}}%
}

\newcommand*\addrlblbycode[1]{\arabic{ADDRLBL@#1}}

\newcommand*\addrbycode[1]{%
  \ifcounter{ADDR@#1}
    {}
    {\newcounter{ADDR@#1}%
     \affil[\addrlblbycode{#1}]{\MyRef{ADDRTXT}{#1}}}%
}

\newcommand*\createanotelblbycode[1]{%
  \ifcounter{ANOTELBL@#1}
    {}
    {\refstepcounter{footnoteANote}\newcounter{ANOTELBL@#1}\setcounter{ANOTELBL@#1}{\value{footnoteANote}}}%
}

\newcommand*\anotelblbycode[1]{\fnsymbol{ANOTELBL@#1}}

\newcommand*\anotebycode[1]{%
  \ifcounter{ANOTE@#1}
    {}
    {\newcounter{ANOTE@#1}%
     \footnotetextANote[\value{ANOTELBL@#1}]{\MyRef{ANOTETXT}{#1}}}%
}
\makeatother

$for(author)$

$for(author.affiliation)$
\createaddrlblbycode{$author.affiliation$}
$endfor$

$if(author.corresponding_author)$
\MyNewLabel{ANOTETXT}{$author.name$@CORRESP}{Corresponding author. \href{mailto:$author.email$}{\nolinkurl{$author.email$}}}
\makeatletter\createanotelblbycode{$author.name$@CORRESP}\makeatother
$endif$

$for(author.footnote)$
\createanotelblbycode{$author.footnote$}
$endfor$

\author[%
$for(author.affiliation)$
\addrlblbycode{$author.affiliation$}%
$sep$,%
$endfor$
$if(author.corresponding_author)$
$if(author.affiliation)$,$endif$%
\makeatletter\anotelblbycode{$author.name$@CORRESP}\makeatother
$endif$
$if(author.footnote)$
$if(author.corresponding_author)$,$elseif(author.affiliation)$,$endif$%
$for(author.footnote)$
$$\anotelblbycode{$author.footnote$}$$%
$sep$,%
$endfor$
$endif$
]{$author.name$}

$for(author.affiliation)$
\addrbycode{$author.affiliation$}
$endfor$

$endfor$

$else$ % Use footnotes for affiliations %%%%%%%%%%%%%

% Get rid of redefinition of \@makefnmark in \maketitle
% Gets rid of spacing issues
\usepackage{etoolbox}
\makeatletter
\patchcmd\maketitle{\def\@makefnmark{\rlap{\@textsuperscript{\normalfont\@thefnmark}}}}{}{}{}
\makeatother

% Hook into the \@thanks command
\makeatletter
\def\thanksAddr#1{% <--- These %'s are necessary for spacing
  \footnotemarkAddr\protected@xdef\@thanks{\@thanks%
        \protect\footnotetextAddr[\the \c@footnoteAddr]{#1}}%
}
\def\thanksANote#1{%
  \footnotemarkANote%
  \protected@xdef\@thanks{\@thanks%
        \protect\footnotetextANote[\the \c@footnoteANote]{#1}}%
}

\newcommand*\thanksAddrbycode[1]{%
  \ifcounter{ADDR@#1}
    {\footnotemarkAddr[\value{ADDR@#1}]}
    {\newcounter{ADDR@#1}%
     \thanksAddr{\MyRef{ADDRTXT}{#1}}%
     \setcounter{ADDR@#1}{\value{footnoteAddr}}} % Note sure this will work
}

\newcommand*\thanksANotebycode[1]{%
  \ifcounter{ANOTE@#1}
    {\footnotemarkANote[\value{ANOTE@#1}]}
    {\newcounter{ANOTE@#1}%
     \thanksANote{\MyRef{ANOTETXT}{#1}}%
     \setcounter{ANOTE@#1}{\value{footnoteANote}}} % Note sure this will work
}
\makeatother

\newcommand*\authsep{, }
\newcommand*\thankssep{$$^{,}$$}

$if(author)$
\author{%
$for(author)$
$author.name$%
$for(author.affiliation)$
\thanksAddrbycode{$author.affiliation$}%
$sep$\thankssep%
$endfor$
$if(author.corresponding_author)$
$if(author.affiliation)$\thankssep$endif$% extra comma
\thanksANote{Corresponding author. \href{mailto:$author.email$}{\nolinkurl{$author.email$}}} % space here seems necessary to get spacing right
$endif$
$if(author.footnote)$$if(author.affiliation)$\thankssep$elseif(author.corresponding_author)$\thankssep$endif$$endif$% extra comma
$for(author.footnote)$
\thanksANotebycode{$author.footnote$}%
$sep$\thankssep%
$endfor$
$sep$\authsep%
$endfor$
}
$endif$%endif(author)
$endif$%endif(authblk)