swig_perl.md

Generate SWIG Perl bindings

Windows

Build with TDM-GCC-64 5.1 & Active State perl 5.24 64-bit

set PATH=%PATH%;C:\TDM-GCC-64\bin;C:\Perl64\bin;

mkdir build
cd build

cmake -G "MinGW Makefiles" -DSWIG_PERL=ON .. 
cmake --build .
ctest

#Test project C:/Repos/fastareader-dev/build
#    Start 1: Test_cppunit
#1/3 Test #1: Test_cppunit .....................   Passed    0.12 sec
#    Start 2: Test_fastareader
#2/3 Test #2: Test_fastareader .................   Passed    0.10 sec
#    Start 3: Test_utils
#3/3 Test #3: Test_utils .......................   Passed    0.08 sec
#
#100% tests passed, 0 tests failed out of 3
#
#Total Test time (real) =   0.34 sec

copy /y lib\libPerlFastaReader.dll ..\Perl\FastaReader.dll
perl ..\Perl\fasta_stats.pl -f ..\test\data\masked.fa

# seq_id   seq_num length bp unmasked bp masked bp % masked
# 0	       r1      0         0           0         0
# nN-*     r2      4         3           1         25
# 0masked  r3      10        10          0         0
# 5masked  r4      10        5           5         50

• http://tdm-gcc.tdragon.net/download
• http://www.activestate.com/activeperl/downloads

Linux

mkdir build
cd build
cmake -DSWIG_PERL=ON -DCMAKE_CXX_FLAGS=-fPIC ..

make clean
make
cd ..

cp build/lib/libPerlFastaReader.so Perl/libFastaReader.so
perl Perl/fasta_stats.pl -f test/data/masked.fa