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indexes and annotations #18

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smw1414 opened this issue May 27, 2018 · 0 comments

smw1414 commented May 27, 2018 •

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Hi,

I found that provided Hg38 indexes and annotations in the http://rnaeditor.uni-frankfurt.de/ may have some problems. The records from HAPMAP.vcf look like redundant. The 1000GenomeProject.vcf only has very few records. Are these files filtered? Can I just use the GATK hg38 bundles instead (https://console.cloud.google.com/storage/browser/broad-references/hg38/v0) ? Thank you.

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