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In [/primersjuju/genome_data.py}(https://github.com/diekhans/PrimerS-JuJu/blob/main/lib/primersjuju/genome_data.py
)
DataWriter in the below code work on MacOS but not Linux
# FIXME:
# stdin=pipettor.DataWriter('\n'.join(names) + '\n')
# for some reason work on MacOS, but not Linux
transcript_beds = {}
tmpNamesFile = fileOps.tmpFileGet()
fileOps.writeLines(tmpNamesFile, names)
with pipettor.Popen(['bigBedNamedItems', '-nameFile', bigbed, tmpNamesFile, '/dev/stdout'],
stdin=tmpNamesFile) as fh:
for b in BedReader(fh):
transcript_beds[b.name] = b
os.unlink(tmpNamesFile)
The text was updated successfully, but these errors were encountered:
In [/primersjuju/genome_data.py}(https://github.com/diekhans/PrimerS-JuJu/blob/main/lib/primersjuju/genome_data.py
)
DataWriter in the below code work on MacOS but not Linux
The text was updated successfully, but these errors were encountered: