MANIFEST.in

# Include the README
include *.md

# Include the license file
include LICENSE

# Include the headers files
recursive-include include *
recursive-include lib/kProcessor/include/kProcessor *
recursive-include lib/kProcessor/ThirdParty/MQF/include *
recursive-include lib/kProcessor/ThirdParty/MQF/include *
recursive-include lib/kProcessor/ThirdParty/json *
recursive-include lib/kProcessor/ThirdParty/sdsl-lite/include *
recursive-include lib/kProcessor/ThirdParty/kmerDecoder/include *
recursive-include lib/kProcessor/ThirdParty/kmerDecoder/lib/parallel-hashmap *
recursive-include lib/parallel-hashmap *
recursive-include lib/kProcessor/ThirdParty/kmerDecoder/lib/kseq/include *

recursive-include kSpider_BUILD_DIR lib*a
recursive-include lib/kProcessor/ThirdParty lib*a

# Include static libs
include kSpider_BUILD_DIR/libkSpider.a
include kSpider_BUILD_DIR/lib/kProcessor/ThirdParty/kmerDecoder/libkmerDecoder.a
include kSpider_BUILD_DIR/lib/kProcessor/ThirdParty/MQF/src/libMQF.a
include kSpider_BUILD_DIR/lib/kProcessor/ThirdParty/sdsl-lite/lib/libsdsl.a

# Include SWIG interfaces
recursive-include src/swig_interfaces *
recursive-include pykSpider/ *