diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW index e640838..babd096 100644 --- a/WHAT_IS_NEW +++ b/WHAT_IS_NEW @@ -3,6 +3,7 @@ RSEM v1.3.0 - Added Prior-Enhanced RSEM (pRSEM) as a submodule - Introduced `--strandedness ` option, `--strand-specific` and `--forward-prob` are deprecated (but still supported) - Revised documentation for `rsem-plot-model`, maked it clear that in alignment statistics, isoform-level (instead of genome-level) multi-mapping reads are shown +- Significantly improved the output information of `rsem-sam-validator`: if indels/clippings/skips are detected in alignments or alignments exceed transcript boundaries, `rsem-sam-validator` will report them instead of telling you the input is valid - Updated the warning message to ask users to make sure that they align their reads agains a set of transcripts instead of genome when RSEM finds less sequences in the BAM file than RSEM's indices --------------------------------------------------------------------------------------------