diff --git a/.coveragerc b/.coveragerc
deleted file mode 100644
index 7154e2f80..000000000
--- a/.coveragerc
+++ /dev/null
@@ -1,28 +0,0 @@
-[run]
-source = py/desispec
-omit =
-   py/desispec/_version.py
-   py/desispec/conftest*
-   py/desispec/cython_version*
-   py/desispec/setup_package*
-   py/desispec/*/setup_package*
-   py/desispec/*/*/setup_package*
-   py/desispec/sphinx/*
-   py/desispec/test/*
-   py/desispec/*/test/*
-   py/desispec/*/*/test/*
-
-[report]
-exclude_lines =
-   # Have to re-enable the standard pragma
-   pragma: no cover
-
-   # Don't complain about packages we have installed
-   except ImportError
-
-   # Don't complain if tests don't hit assertions
-   raise AssertionError
-   raise NotImplementedError
-
-   # Don't complain about script hooks
-   ### def main\(.*\):
diff --git a/setup.cfg b/setup.cfg
index 1cee296c9..6aadb66f5 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,3 +1,34 @@
+[tool:pytest]
+testpaths = py
+
+[coverage:run]
+relative_files = True
+source =
+    py/desispec
+omit =
+    py/desispec/_version.py
+    py/desispec/conftest*
+    py/desispec/test/*
+    */desispec/_version.py
+    */desispec/conftest*
+    */desispec/test/*
+
+[coverage:report]
+exclude_lines =
+    # Have to re-enable the standard pragma
+    pragma: no cover
+    # Don't complain about packages we have installed
+    except ImportError
+    # Don't complain if tests don't hit assertions
+    raise AssertionError
+    raise NotImplementedError
+    # Don't complain about script hooks
+    def main\(.*\):
+    # Ignore branches that don't pertain to this version of Python
+    pragma: py{ignore_python_version}
+    # Don't complain about IPython completion helper
+    def _ipython_key_completions_
+
 [pycodestyle]
 # See https://pycodestyle.readthedocs.io/en/latest/intro.html#configuration
 # for details of these configuration options.