diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 06a11271d..b8bcbd98b 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -85,7 +85,7 @@ jobs:
                 python -m pip install --no-deps --force-reinstall --ignore-installed 'fitsio${{ matrix.fitsio-version }}'
                 svn export https://desi.lbl.gov/svn/code/desimodel/${DESIMODEL_DATA}/data
             - name: Run the test with coverage
-              run: DESIMODEL=$(pwd) pytest --cov py/desispec/test
+              run: DESIMODEL=$(pwd) pytest --cov=desispec py/desispec/test
             - name: Coveralls
               env:
                 COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
diff --git a/doc/api.rst b/doc/api.rst
index 41cec2d4d..3afaae0d5 100644
--- a/doc/api.rst
+++ b/doc/api.rst
@@ -353,9 +353,6 @@ desispec API
 .. automodule:: desispec.scripts.nightly_bias
     :members:
 
-.. automodule:: desispec.scripts.pipe_exec
-    :members:
-
 .. automodule:: desispec.scripts.preproc
     :members: