DESCRIPTION

Package: MultiAmplicon
Title: Metabarcoding and microbiome analysis using multiple amplicons
Version: 0.1.1
Authors@R: person("Emanuel", "Heitlinger", email = "emanuelheitlinger@gmail.com", role = c("aut", "cre"))
Description: This package allows to run a typical R/bioconductor (i.e. dada2) workflow on
    multiple amplicons defined by different primer pairs (e.g. on the 16S or 18S
    genes and COI).
biocViews: Metagenomics,  Genetics, Sequencing, Microbiome,
    Metagenomics, Clustering, Classification, MultipleComparison,
    GeneticVariability
URL: https://derele.github.io/MultiAmplicon/
BugReports: https://github.com/derele/MultiAmplicon/issues
Imports:
    Biostrings (>= 2.42.0),
    pheatmap,
    methods,
    plyr,
    ggplot2,
    reshape,
    assertthat,
    taxonomizr,
    data.table,
    phyloseq,
    ShortRead,              
    dada2
Depends:
    R (>= 3.3)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests:
    testthat,
    covr,
    knitr,
    rmarkdown,
    SRAdb
VignetteBuilder: knitr