diff --git a/.github/workflows/testandcov.yml b/.github/workflows/testandcov.yml index 4c73d180..f455e4ca 100644 --- a/.github/workflows/testandcov.yml +++ b/.github/workflows/testandcov.yml @@ -34,6 +34,7 @@ jobs: with: auto-update-conda: true python-version: ${{ matrix.python-version }} + mamba-version: "*" activate-environment: minian environment-file: environment.yml - name: Install test dependencies diff --git a/docs/source/start_guide/install.rst b/docs/source/start_guide/install.rst index 95b1a63f..a858ac56 100644 --- a/docs/source/start_guide/install.rst +++ b/docs/source/start_guide/install.rst @@ -22,6 +22,19 @@ After you have created and activated an environment, you can install MiniAn with and Done! +Alternatively, you can use `mamba `_ to install minian, which usually provides faster speed when solving the dependencies. +To do so, you first need to install `mamba`, either in minian environment or in your base environment. + +.. code-block:: console + + conda install -y -c conda-forge mamba + +After this, you can use `mamba` as a drop-in replacement command for `conda` to install minian: + +.. code-block:: console + + mamba install -y -c conda-forge minian + Install from source -------------------