README.md

TPD: A Computational Pipeline for Therapeutic Phage Discovery from Prophages

Install

conda env create -f environment.yml

Usage

nextflow run tpd.nf -profile hpc_slurm --mode "all" --datadir data -resume

If you want to add previous predicted prophages, put ${sampleID}_old.gbk in data folder.

Flowchart

gbk_annotation.nf

TODO