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diff --git a/pydeeptools/deeptools/test/test_fingerprintplot.py b/pydeeptools/deeptools/test/test_fingerprintplot.py
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+++ b/pydeeptools/deeptools/test/test_fingerprintplot.py
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+import deeptools.plotFingerprint as pf
+
+import os.path
+from os import unlink
+from matplotlib.testing.compare import compare_images
+
+
+ROOT = os.path.dirname(os.path.abspath(__file__)) + "/test_data/"
+BAM_IN1 = ROOT + "bowtie2_test1.bam"
+FIN_PLOT1 = ROOT + "plotFingerprint_result1.png"
+FIN_PLOT2 = ROOT + "plotFingerprint_result2.png"
+
+
+def test_fingerprint_plot_with_minimal_options():
+    """
+    Test minimal command line args for fingerprint plot
+    """
+    out_png = '/tmp/fingerprint_plot1.png'
+    args = "-b {} {} -o {}".format(BAM_IN1, BAM_IN1, out_png).split()
+    pf.main(args)
+
+    res = compare_images(FIN_PLOT1, out_png, 50)
+    assert res is None, "Plots do not match"
+    unlink(out_png)
+
+
+def test_fingerprint_plot_with_advance_options():
+    """
+    Test command line args for fingerprint plot with additional options
+    """
+    out_rawcounts = '/tmp/rawcounts.tsv'
+    out_qualitymetric = '/tmp/qualitymetrics.tsv'
+    out_png2 = '/tmp/fingerprint_plot2.png'
+    args = "-b {0} {0} -o {1} --outRawCounts {2} --outQualityMetrics {3} -T Test_Fingerpring_Plot --JSDsample {0}".format(BAM_IN1, out_png2, out_rawcounts, out_qualitymetric).split()
+    pf.main(args)
+
+    _foo = open(out_rawcounts, "r")
+    result = _foo.readlines()[2:7]
+    _expected = ["1327\t1327\n", "2015\t2015\n", "2928\t2928\n", "4419\t4419\n","8644\t8644\n"]
+    assert result == _expected, "Contens in rawcounts files differ"
+
+    with open(out_qualitymetric, "r") as _foo:
+        result2 = len(_foo.readlines())
+    _expected = 3
+    assert result2 == _expected, "No of lines in quality metrics files differ"
+
+    res = compare_images(FIN_PLOT2, out_png2, 50)
+    assert res is None, "Plots do not match"
+    unlink(out_png2)
+    unlink(out_rawcounts)
+    unlink(out_qualitymetric)