From 890dbdbda0d2ec6bb972ddb6bc003c3890afbdc5 Mon Sep 17 00:00:00 2001
From: Lucille Delisle <lucille.delisle@epfl.ch>
Date: Thu, 11 Apr 2024 15:32:25 +0200
Subject: [PATCH 1/5] use importlib_metadata with python 3.7

---
 .github/workflows/test.yml | 1 +
 hicmatrix/lib/cool.py      | 5 ++++-
 pyproject.toml             | 3 ++-
 3 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 2093630..aa6ecf8 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -12,6 +12,7 @@ jobs:
     strategy:
       matrix:
         python-version:
+          - "3.7"
           - "3.8"
           - "3.9"
           - "3.10"
diff --git a/hicmatrix/lib/cool.py b/hicmatrix/lib/cool.py
index 83bf955..84d68a5 100644
--- a/hicmatrix/lib/cool.py
+++ b/hicmatrix/lib/cool.py
@@ -2,7 +2,10 @@
 import os
 
 import gc
-from importlib.metadata import version
+try:
+    from importlib.metadata import version
+except ImportError:
+    from importlib_metadata import version
 
 import cooler
 import h5py
diff --git a/pyproject.toml b/pyproject.toml
index 305e1a9..5884686 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,7 +21,8 @@ dependencies = [
     "tables >= 3.5",
     "pandas >= 0.25",
     "cooler >= 0.8.9",
-    "intervaltree >= 3.0"
+    "intervaltree >= 3.0",
+    "importlib_metadata; python_version<'3.8'"
 ]
 
 [project.urls]

From 7aee53e2d9d85054f9b1acd8fa4c079e2e4396d8 Mon Sep 17 00:00:00 2001
From: Lucille Delisle <lucille.delisle@epfl.ch>
Date: Thu, 11 Apr 2024 15:33:46 +0200
Subject: [PATCH 2/5] bump version

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 5884686..306f275 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "HiCMatrix"
-version = "17.1"
+version = "17.2"
 authors = [
   { name = "Lucille Lopez-Delisle, Joachim Wolff, Leily Rabbani, Vivek Bhardwaj, Fidel Ramirez", email = "lucille.delisle@epfl.ch" },
 ]

From 0958660864e878c65d407307d2807c5aedc1e9c8 Mon Sep 17 00:00:00 2001
From: Lucille Delisle <lucille.delisle@epfl.ch>
Date: Thu, 11 Apr 2024 15:42:09 +0200
Subject: [PATCH 3/5] allow python 3.7

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 306f275..f7fee0e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -10,7 +10,7 @@ authors = [
 ]
 description = "Helper package which implements HiCMatrix class for HiCExplorer, pyGenomeTracks and scHiCExplorer."
 readme = "README.rst"
-requires-python = ">=3.8"
+requires-python = ">=3.7"
 classifiers = [
     'Intended Audience :: Science/Research',
     'Topic :: Scientific/Engineering :: Bio-Informatics',

From 871331f1632fe82ded910e34d07f50da36ea27f4 Mon Sep 17 00:00:00 2001
From: Lucille Delisle <lucille.delisle@epfl.ch>
Date: Thu, 11 Apr 2024 15:47:30 +0200
Subject: [PATCH 4/5] simplify pytest config

---
 pytest.ini | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/pytest.ini b/pytest.ini
index cc8b80a..fa32b1b 100644
--- a/pytest.ini
+++ b/pytest.ini
@@ -3,6 +3,4 @@ filterwarnings =
     ignore::UserWarning
     ignore::FutureWarning
     ignore::DeprecationWarning
-    ignore::ImportWarning
-    ignore::tables.exceptions.FlavorWarning
-    ; error::ResourceWarning
\ No newline at end of file
+    ignore::ImportWarning
\ No newline at end of file

From d600c10215064b1530e173fe4248874ea9fb115b Mon Sep 17 00:00:00 2001
From: Lucille Delisle <lucille.delisle@epfl.ch>
Date: Thu, 11 Apr 2024 15:59:46 +0200
Subject: [PATCH 5/5] pin version of c-blosc2

---
 HiCMatrix_env_ci.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/HiCMatrix_env_ci.yml b/HiCMatrix_env_ci.yml
index e774e1b..17761cb 100644
--- a/HiCMatrix_env_ci.yml
+++ b/HiCMatrix_env_ci.yml
@@ -7,6 +7,7 @@ dependencies:
    - scipy >= 1.2
    - pandas >= 0.25
    - pytables >= 3.5
+   - c-blosc2<=2.14.1 # Temp fix see https://github.com/Blosc/c-blosc2/issues/601
    - cooler >= 0.8.9
    - intervaltree >= 3.0
    - pytest