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Welcome to MoSeq2 Wiki!

This wiki contains documentation for how to set up hardware, how to acquire data, and how to install and run the full MoSeq2 pipeline. Note that the documentation reflects the latest release versions of the codebase.

Updated 11/08/2021.

Useful Links

Experiment Setup

Bill of Materials | MoSeq Cage Installation | MoSeq Bucket Preparation

Depth Data Acquisition

Kinect2 | Azure

MoSeq Installation

MacOS: Conda | Docker

Linux: Conda

Windows: Conda | Docker

MoSeq Analysis Pipeline

Extraction and Modeling: Jupyter Notebook | Command Line Interface

Visualization: Jupyter Notebook | Command Line Interface

Tutorials and Resources

• Google Colab

• Download Test Data

• Video Tutorials

• Troubleshooting and Tips

• Developer Guidelines

• Existing Issues

• Submit a Bug Report

Latest versions

• moseq2-extract==1.0.1beta
• moseq2-pca==1.0.1beta
• moseq2-model==1.0.1beta
• moseq2-viz==1.0.2beta
• moseq2-app==1.0.2beta

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MoSeq2 logo by Sigrid Knemeyer